Re: [igraph] Problem installing python-igraph on Mac OS X Lion related to ARPACK

[Jonathan Donges]

Hi,

No, both files are not there. There are the following files in 
/opt/local/include/igraph:

-rw-r--r--  1 root  admin    1042  7 Jan 13:11 DensityGrid.h
-rw-r--r--  1 root  admin    1085  7 Jan 13:11 DensityGrid_3d.h
-rw-r--r--  1 root  admin   22624  7 Jan 13:11 NetDataTypes.h
-rw-r--r--  1 root  admin    2468  7 Jan 13:11 NetRoutines.h
-rw-r--r--  1 root  admin   13492  7 Jan 13:11 arpack.h
-rw-r--r--  1 root  admin    5676  7 Jan 13:11 arpack_internal.h
-rw-r--r--  1 root  admin    2111  7 Jan 13:11 array.h
-rw-r--r--  1 root  admin    2563  7 Jan 13:11 array.pmt
-rw-r--r--  1 root  admin   24822  7 Jan 13:11 attributes.h
-rw-r--r--  1 root  admin    1833  7 Jan 13:11 dqueue.h
-rw-r--r--  1 root  admin    7413  7 Jan 13:11 dqueue.pmt
-rw-r--r--  1 root  admin     563  7 Jan 13:11 drl_Node.h
-rw-r--r--  1 root  admin     579  7 Jan 13:11 drl_Node_3d.h
-rw-r--r--  1 root  admin    2834  7 Jan 13:11 drl_graph.h
-rw-r--r--  1 root  admin    2513  7 Jan 13:11 drl_graph_3d.h
-rw-r--r--  1 root  admin    1211  7 Jan 13:11 drl_layout.h
-rw-r--r--  1 root  admin    1210  7 Jan 13:11 drl_layout_3d.h
-rw-r--r--  1 root  admin     835  7 Jan 13:11 drl_parse.h
-rw-r--r--  1 root  admin   21083  7 Jan 13:11 error.h
-rw-r--r--  1 root  admin    4688  7 Jan 13:11 f2c.h
-rw-r--r--  1 root  admin    1727  7 Jan 13:11 gengraph_box_list.h
-rw-r--r--  1 root  admin    3689  7 Jan 13:11 gengraph_definitions.h
-rw-r--r--  1 root  admin    1443  7 Jan 13:11 gengraph_degree_sequence.h
-rw-r--r--  1 root  admin    6567  7 Jan 13:11 gengraph_graph_molloy_hash.h
-rw-r--r--  1 root  admin   10317  7 Jan 13:11 gengraph_graph_molloy_optimized.h
-rw-r--r--  1 root  admin    7284  7 Jan 13:11 gengraph_hash.h
-rw-r--r--  1 root  admin    1993  7 Jan 13:11 gengraph_header.h
-rw-r--r--  1 root  admin    2113  7 Jan 13:11 gengraph_powerlaw.h
-rw-r--r--  1 root  admin    9831  7 Jan 13:11 gengraph_qsort.h
-rw-r--r--  1 root  admin    6445  7 Jan 13:11 gengraph_random.h
-rw-r--r--  1 root  admin    1311  7 Jan 13:11 gengraph_vertex_cover.h
-rw-r--r--  1 root  admin    3012  7 Jan 13:11 gml_tree.h
-rw-r--r--  1 root  admin    1925  7 Jan 13:11 heap.h
-rw-r--r--  1 root  admin    9136  7 Jan 13:11 heap.pmt
-rw-r--r--  1 root  admin  115521  7 Jan 13:11 igraph.h
-rw-r--r--  1 root  admin    2010  7 Jan 13:11 igraph_math.h
-rw-r--r--  1 root  admin    2790  7 Jan 13:11 igraph_pmt.h
-rw-r--r--  1 root  admin    1793  7 Jan 13:11 igraph_pmt_off.h
-rw-r--r--  1 root  admin    5707  7 Jan 13:11 interrupt.h
-rw-r--r--  1 root  admin    7567  7 Jan 13:11 matrix.h
-rw-r--r--  1 root  admin   38279  7 Jan 13:11 matrix.pmt
-rw-r--r--  1 root  admin    4423  7 Jan 13:11 pottsmodel_2.h
-rw-r--r--  1 root  admin    1640  7 Jan 13:11 stack.h
-rw-r--r--  1 root  admin    6500  7 Jan 13:11 stack.pmt
-rw-r--r--  1 root  admin   26043  7 Jan 13:11 types.h
-rw-r--r--  1 root  admin    8862  7 Jan 13:11 vector.h
-rw-r--r--  1 root  admin   54712  7 Jan 13:11 vector.pmt
-rw-r--r--  1 root  admin    6458  7 Jan 13:11 walktrap_communities.h
-rw-r--r--  1 root  admin    3389  7 Jan 13:11 walktrap_graph.h
-rw-r--r--  1 root  admin    4285  7 Jan 13:11 walktrap_heap.h

Best,
Jonathan


Am 07.01.2012 um 13:45 schrieb Tamás Nepusz:

> Hi,
> 
> Do you have igraph_arpack.h, igraph_error.h and similar header files in 
> /opt/local/include/igraph?
> 
> -- 
> T.
> 
> On 7 Jan 2012, at 13:43, Jonathan Donges wrote:
> 
>> Hi Tamas,
>> 
>> That helped to reduce a lot of the errors. But still there are some left 
>> related to arpack again:
>> 
>>>> sudo python setup.py install
>> 
>> Include path: /opt/local/include/igraph
>> Library path: /opt/local/lib
>> running install
>> running bdist_egg
>> running egg_info
>> writing python_igraph.egg-info/PKG-INFO
>> writing top-level names to python_igraph.egg-info/top_level.txt
>> writing dependency_links to python_igraph.egg-info/dependency_links.txt
>> reading manifest file 'python_igraph.egg-info/SOURCES.txt'
>> reading manifest template 'MANIFEST.in'
>> writing manifest file 'python_igraph.egg-info/SOURCES.txt'
>> installing library code to build/bdist.macosx-10.6-intel/egg
>> running install_lib
>> running build_py
>> running build_ext
>> building 'igraph._igraph' extension
>> gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g 
>> -O2 -DNDEBUG -g -O3 -I/opt/local/include/igraph -I../../build/include 
>> -I../../include -I/usr/local/include -I/usr/include 
>> -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c 
>> src/arpackobject.c -o build/temp.macosx-10.6-intel-2.7/src/arpackobject.o
>> In file included from src/arpackobject.c:24:
>> src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
>> In file included from src/arpackobject.c:26:
>> src/error.h:28:26: error: igraph_error.h: No such file or directory
>> In file included from src/arpackobject.c:24:
>> src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
>> In file included from src/arpackobject.c:26:
>> src/error.h:28:26: error: igraph_error.h: No such file or directory
>> lipo: can't figure out the architecture type of: /var/tmp//cclTdhxd.out
>> error: command 'gcc-4.2' failed with exit status 1
>> 
>> What else can be done?
>> 
>> Cheers,
>> Jonathan
>> 
>> 
>> Am 06.01.2012 um 15:14 schrieb Tamás Nepusz:
>> 
>>> Hi,
>>> 
>>> I think I know what the problem is. igraph 0.6 currently puts its include 
>>> files in an igraph/ subfolder within the include dir (I guess 
>>> /usr/local/include), but setup.cfg still refers to /usr/local/include. Try 
>>> using /usr/local/include/igraph instead. The library path can stay as is.
>>> 
>>> Cheers,
>>> Tamas
>>> 
>>> On 6 Jan 2012, at 15:06, Jonathan Donges wrote:
>>> 
>>>> Hi,
>>>> 
>>>> I removed all older versions of the igraph C libraries and made sure that 
>>>> the libs are installed in /usr/local/lib. The headers are installed in 
>>>> /usr/local/include. I made sure that these directories are referenced both 
>>>> in the setup.cfg and setup.py files as recommended:
>>>> 
>>>> sudo python setup.py install
>>>> Using default include and library paths for compilation
>>>> If the compilation fails, please edit the LIBIGRAPH_FALLBACK_*
>>>> variables in setup.py or include_dirs and library_dirs in 
>>>> setup.cfg to point to the correct directories and libraries
>>>> where the C core of igraph is installed
>>>> ()
>>>> Include path: /usr/include /usr/local/include
>>>> Library path: /usr/lib /usr/local/lib
>>>> 
>>>> I still get the same errors as before when trying to install python-igraph 
>>>> on Lion:
>>>> 
>>>> …
>>>> building 'igraph._igraph' extension
>>>> gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 
>>>> -g -O2 -DNDEBUG -g -O3 -I/usr/include -I/usr/local/include 
>>>> -I../../build/include -I../../include -I/usr/local/include -I/usr/include 
>>>> -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c 
>>>> src/arpackobject.c -o build/temp.macosx-10.6-intel-2.7/src/arpackobject.o
>>>> In file included from src/arpackobject.c:24:
>>>> src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
>>>> In file included from src/arpackobject.h:29,
>>>>              from src/arpackobject.c:24:
>>>> src/graphobject.h:28:20: error: igraph.h: No such file or directory
>>>> …
>>>> 
>>>> Do you have an idea what I could do next?
>>>> 
>>>> Thanks,
>>>> Jonathan
>>>> 
>>>> 
>>>> Am 05.01.2012 um 22:53 schrieb Tamás Nepusz:
>>>> 
>>>>>> The igraph headers reside in /usr/local/include on my system. Still, I 
>>>>>> get the same error. Maybe the version is not correct (I had an earlier 
>>>>>> version of graph installed before upgrading to Lion from Leopard)? How 
>>>>>> can I check the version of the headers?
>>>>> Check out /usr/local/include/igraph_version.h, it should contain the 
>>>>> version number. If you don't have this file then the headers are from 
>>>>> 0.5.x since this header has been added only in the 0.6 branch.
>>>>> 
>>>>> Cheers,
>>>>> T.
>>>>> _______________________________________________
>>>>> igraph-help mailing list
>>>>> address@hidden
>>>>> https://lists.nongnu.org/mailman/listinfo/igraph-help
>>>> 
>>>> 
>>>> _______________________________________________
>>>> igraph-help mailing list
>>>> address@hidden
>>>> https://lists.nongnu.org/mailman/listinfo/igraph-help
>>>> 
>>> 
>>> 
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>> 
>> 
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> 
> 
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