Re: [igraph] Problem installing python-igraph on Mac OS X Lion related to ARPACK

[Jonathan Donges]

Hi Tamas,

That helped to reduce a lot of the errors. But still there are some left 
related to arpack again:

>> sudo python setup.py install

Include path: /opt/local/include/igraph
Library path: /opt/local/lib
running install
running bdist_egg
running egg_info
writing python_igraph.egg-info/PKG-INFO
writing top-level names to python_igraph.egg-info/top_level.txt
writing dependency_links to python_igraph.egg-info/dependency_links.txt
reading manifest file 'python_igraph.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'python_igraph.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.6-intel/egg
running install_lib
running build_py
running build_ext
building 'igraph._igraph' extension
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g 
-O2 -DNDEBUG -g -O3 -I/opt/local/include/igraph -I../../build/include 
-I../../include -I/usr/local/include -I/usr/include 
-I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c 
src/arpackobject.c -o build/temp.macosx-10.6-intel-2.7/src/arpackobject.o
In file included from src/arpackobject.c:24:
src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
In file included from src/arpackobject.c:26:
src/error.h:28:26: error: igraph_error.h: No such file or directory
In file included from src/arpackobject.c:24:
src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
In file included from src/arpackobject.c:26:
src/error.h:28:26: error: igraph_error.h: No such file or directory
lipo: can't figure out the architecture type of: /var/tmp//cclTdhxd.out
error: command 'gcc-4.2' failed with exit status 1

What else can be done?

Cheers,
Jonathan


Am 06.01.2012 um 15:14 schrieb Tamás Nepusz:

> Hi,
> 
> I think I know what the problem is. igraph 0.6 currently puts its include 
> files in an igraph/ subfolder within the include dir (I guess 
> /usr/local/include), but setup.cfg still refers to /usr/local/include. Try 
> using /usr/local/include/igraph instead. The library path can stay as is.
> 
> Cheers,
> Tamas
> 
> On 6 Jan 2012, at 15:06, Jonathan Donges wrote:
> 
>> Hi,
>> 
>> I removed all older versions of the igraph C libraries and made sure that 
>> the libs are installed in /usr/local/lib. The headers are installed in 
>> /usr/local/include. I made sure that these directories are referenced both 
>> in the setup.cfg and setup.py files as recommended:
>> 
>> sudo python setup.py install
>> Using default include and library paths for compilation
>> If the compilation fails, please edit the LIBIGRAPH_FALLBACK_*
>> variables in setup.py or include_dirs and library_dirs in 
>> setup.cfg to point to the correct directories and libraries
>> where the C core of igraph is installed
>> ()
>> Include path: /usr/include /usr/local/include
>> Library path: /usr/lib /usr/local/lib
>> 
>> I still get the same errors as before when trying to install python-igraph 
>> on Lion:
>> 
>> …
>> building 'igraph._igraph' extension
>> gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g 
>> -O2 -DNDEBUG -g -O3 -I/usr/include -I/usr/local/include 
>> -I../../build/include -I../../include -I/usr/local/include -I/usr/include 
>> -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c 
>> src/arpackobject.c -o build/temp.macosx-10.6-intel-2.7/src/arpackobject.o
>> In file included from src/arpackobject.c:24:
>> src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
>> In file included from src/arpackobject.h:29,
>>                from src/arpackobject.c:24:
>> src/graphobject.h:28:20: error: igraph.h: No such file or directory
>> …
>> 
>> Do you have an idea what I could do next?
>> 
>> Thanks,
>> Jonathan
>> 
>> 
>> Am 05.01.2012 um 22:53 schrieb Tamás Nepusz:
>> 
>>>> The igraph headers reside in /usr/local/include on my system. Still, I get 
>>>> the same error. Maybe the version is not correct (I had an earlier version 
>>>> of graph installed before upgrading to Lion from Leopard)? How can I check 
>>>> the version of the headers?
>>> Check out /usr/local/include/igraph_version.h, it should contain the 
>>> version number. If you don't have this file then the headers are from 0.5.x 
>>> since this header has been added only in the 0.6 branch.
>>> 
>>> Cheers,
>>> T.
>>> _______________________________________________
>>> igraph-help mailing list
>>> address@hidden
>>> https://lists.nongnu.org/mailman/listinfo/igraph-help
>> 
>> 
>> _______________________________________________
>> igraph-help mailing list
>> address@hidden
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>> 
> 
> 
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