Re: [igraph] Problem installing python-igraph on Mac OS X Lion related to ARPACK

[Jonathan Donges]

Tamas,

The igraph headers reside in /usr/local/include on my system. Still, I get the 
same error. Maybe the version is not correct (I had an earlier version of graph 
installed before upgrading to Lion from Leopard)? How can I check the version 
of the headers? 

Cheers,
Jonathan

Am 05.01.2012 um 16:42 schrieb Tamás Nepusz:

> Hi,
> 
> It seems like the igraph headers are not found while trying to compile the 
> Python interface. (This has nothing to do with ARPACK, it just happens to be 
> the case that arpackobject.c is the first file that setup.py tries to 
> compile). Where have you installed the headers of igraph 0.6? If it is not in 
> one of the standard locations (i.e. /usr/include or /usr/local/include), 
> adjust setup.cfg appropriately.
> 
> Cheers,
> Tamas
> 
> On 5 Jan 2012, at 16:37, Jonathan Donges wrote:
> 
>> Hi Tamas,
>> 
>> I managed to compile and install the latest nightly build of the igraph 
>> C-library 0.6 on Mac OS X Lion. 
>> 
>> Now I get the following error messages seemingly related to ARPACK when 
>> trying to install the latest nightly build of python-igraph 0.6:
>> 
>> gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g 
>> -O2 -DNDEBUG -g -O3 -I/usr/include -I/usr/local/include 
>> -I../../build/include -I../../include -I/usr/local/include -I/usr/include 
>> -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c 
>> src/arpackobject.c -o build/temp.macosx-10.6-intel-2.7/src/arpackobject.o
>> In file included from src/arpackobject.c:24:
>> src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
>> In file included from src/arpackobject.h:29,
>>                from src/arpackobject.c:24:
>> src/graphobject.h:28:20: error: igraph.h: No such file or directory
>> In file included from src/arpackobject.h:29,
>>                from src/arpackobject.c:24:
>> src/graphobject.h:42: error: expected specifier-qualifier-list before 
>> ‘igraph_t’
>> src/graphobject.h:59: error: expected ‘)’ before ‘*’ token
>> In file included from src/arpackobject.c:24:
>> src/arpackobject.h:43: error: expected specifier-qualifier-list before 
>> ‘igraph_arpack_options_t’
>> src/arpackobject.h:54: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
>> ‘__attribute__’ before ‘*’ token
>> In file included from src/arpackobject.c:26:
>> src/error.h:28:26: error: igraph_error.h: No such file or directory
>> src/arpackobject.c: In function ‘igraphmodule_ARPACKOptions_new’:
>> src/arpackobject.c:49: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:50: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c: In function ‘igraphmodule_ARPACKOptions_getattr’:
>> src/arpackobject.c:73: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:76: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:78: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:78: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:81: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:83: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:85: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:87: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:89: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:92: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:94: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:96: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:98: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:100: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:102: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:104: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:106: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:108: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:110: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:112: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c: In function ‘igraphmodule_ARPACKOptions_setattr’:
>> src/arpackobject.c:133: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:144: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:144: error: ‘igraph_real_t’ undeclared (first use in this 
>> function)
>> src/arpackobject.c:144: error: (Each undeclared identifier is reported only 
>> once
>> src/arpackobject.c:144: error: for each function it appears in.)
>> src/arpackobject.c:144: error: expected ‘;’ before ‘PyInt_AsLong’
>> src/arpackobject.c:146: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:146: error: expected ‘;’ before ‘PyFloat_AsDouble’
>> src/arpackobject.c: At top level:
>> src/arpackobject.c:160: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
>> ‘__attribute__’ before ‘*’ token
>> In file included from src/arpackobject.c:24:
>> src/arpackobject.h:28:27: error: igraph_arpack.h: No such file or directory
>> In file included from src/arpackobject.h:29,
>>                from src/arpackobject.c:24:
>> src/graphobject.h:28:20: error: igraph.h: No such file or directory
>> In file included from src/arpackobject.h:29,
>>                from src/arpackobject.c:24:
>> src/graphobject.h:42: error: expected specifier-qualifier-list before 
>> ‘igraph_t’
>> src/graphobject.h:59: error: expected ‘)’ before ‘*’ token
>> In file included from src/arpackobject.c:24:
>> src/arpackobject.h:43: error: expected specifier-qualifier-list before 
>> ‘igraph_arpack_options_t’
>> src/arpackobject.h:54: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
>> ‘__attribute__’ before ‘*’ token
>> In file included from src/arpackobject.c:26:
>> src/error.h:28:26: error: igraph_error.h: No such file or directory
>> src/arpackobject.c: In function ‘igraphmodule_ARPACKOptions_new’:
>> src/arpackobject.c:49: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:50: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c: In function ‘igraphmodule_ARPACKOptions_getattr’:
>> src/arpackobject.c:73: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:76: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:78: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:78: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:81: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:83: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:85: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:87: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:89: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:92: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:94: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:96: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:98: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:100: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:102: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:104: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:106: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:108: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:110: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c:112: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params_out’
>> src/arpackobject.c: In function ‘igraphmodule_ARPACKOptions_setattr’:
>> src/arpackobject.c:133: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:144: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:144: error: ‘igraph_real_t’ undeclared (first use in this 
>> function)
>> src/arpackobject.c:144: error: (Each undeclared identifier is reported only 
>> once
>> src/arpackobject.c:144: error: for each function it appears in.)
>> src/arpackobject.c:144: error: expected ‘;’ before ‘PyInt_AsLong’
>> src/arpackobject.c:146: error: ‘igraphmodule_ARPACKOptionsObject’ has no 
>> member named ‘params’
>> src/arpackobject.c:146: error: expected ‘;’ before ‘PyFloat_AsDouble’
>> src/arpackobject.c: At top level:
>> src/arpackobject.c:160: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
>> ‘__attribute__’ before ‘*’ token
>> lipo: can't figure out the architecture type of: 
>> /var/folders/dp/hbv44gbn6x905mcft1zvd11c0000gn/T//ccM36Bwh.out
>> error: command 'gcc-4.2' failed with exit status 1
>> 
>> Do you have an idea what would help here?
>> 
>> Thanks a lot and cheers!
>> Jonathan
>> 
>> 
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