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Re: [igraph] [BioC] Rgraphviz: how to read a \"dot\" file?
|
From: |
Sam Steingold |
|
Subject: |
Re: [igraph] [BioC] Rgraphviz: how to read a \"dot\" file? |
|
Date: |
Tue, 16 Oct 2012 12:41:01 -0400 |
|
User-agent: |
Gnus/5.13 (Gnus v5.13) Emacs/24.2.50 (gnu/linux) |
> * Kasper Daniel Hansen <address@hidden> [2012-10-16 11:23:35 -0400]:
>
>> 2. when I manually expand the path, it segfaults:
>>
>> *** caught segfault ***
>> address 0x18, cause 'memory not mapped'
>>
>> Traceback:
>> 1: graphLayout(g)
>> 2: agread("/home/sds/xgraph/share-click/2012-10-09/country-graph.dot")
>
> Can you send me the dot file? The segfault probably comes from
> Graphviz, suggesting that igraph has produced an invalid file. It
> would of course be nice for us to catch the exception, but I am not
> sure I have resources to fix this.
I attached the file to the message you are replying to, but, apparently,
bioconductor stripped it.
Here you go again:
/* Created by igraph 0.6 */
graph {
0 [
name=US
share=1575710
click=1553210
];
1 [
name=BR
share=679930
click=674456
];
2 [
name=TR
share=470264
click=439241
];
3 [
name=IT
share=448986
click=456651
];
4 [
name=ES
share=428202
click=381185
];
5 [
name=PL
share=357565
click=352592
];
6 [
name=CA
share=290254
click=307665
];
7 [
name=JO
share=328015
click=225261
];
8 [
name=FR
share=249082
click=243382
];
9 [
name=AR
share=228488
click=220713
];
10 [
name=EG
share=253088
click=190360
];
11 [
name=GB
share=200315
click=236975
];
12 [
name=MX
share=198487
click=203054
];
13 [
name=NL
share=188229
click=190377
];
14 [
name=GR
share=169823
click=157652
];
15 [
name=DE
share=124079
click=153873
];
16 [
name=FI
share=137844
click=139830
];
17 [
name=NO
share=136994
click=134181
];
18 [
name=BE
share=123951
click=131956
];
19 [
name=VE
share=117556
click=131975
];
20 [
name=PT
share=104487
click=107991
];
21 [
name=RU
share=115777
click=94980
];
22 [
name=MY
share=97763
click=99975
];
23 [
name=IN
share=108809
click=87181
];
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name=TH
share=89223
click=90440
];
25 [
name=CO
share=87510
click=91204
];
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name=PH
share=86857
click=77599
];
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name=SE
share=75511
click=85213
];
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name=RS
share=83905
click=76244
];
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name=ID
share=86622
click=68000
];
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name=GE
share=78419
click=74732
];
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name=AU
share=66264
click=82268
];
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name=SA
share=37603
click=104989
];
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name=DK
share=61304
click=74027
];
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name=HU
share=61998
click=63941
];
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name=TW
share=59279
click=63361
];
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name=NP
share=83587
click=30357
];
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name=PK
share=57302
click=48677
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name=CL
share=49174
click=54314
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name=BG
share=50947
click=49328
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name=RO
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click=47457
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click=66115
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click=44954
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name=UA
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click=39200
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name=MK
share=31588
click=36655
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name=SG
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click=42293
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name=KR
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click=38814
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name=BA
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click=31005
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name=MA
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click=31745
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name=IE
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click=33262
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name=VN
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click=29243
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name=IQ
share=10918
click=48562
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name=PE
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click=27089
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name=CH
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name=CZ
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name=PR
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weight=591.369400199104
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weight=649.346792375487
];
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weight=3195.7583347616
];
202 -- 166 [
weight=2335.39873456601
];
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weight=11109.7611670541
];
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weight=1275.38717781263
];
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weight=457.738826815642
];
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weight=1242.04244588913
];
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weight=2160.48851427006
];
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weight=307.708139083139
];
222 -- 170 [
weight=8516.56720430108
];
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weight=246.966064700533
];
187 -- 171 [
weight=986.352117061021
];
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weight=631.527508305648
];
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weight=1298.42745901639
];
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weight=1152.05927272727
];
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weight=1920.09878787879
];
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weight=1481.39042517903
];
183 -- 175 [
weight=239.903301529608
];
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weight=3911.31234567901
];
180 -- 176 [
weight=343.196685202571
];
185 -- 176 [
weight=645.071874575811
];
181 -- 178 [
weight=6845.34496665232
];
183 -- 178 [
weight=959.84711960049
];
202 -- 178 [
weight=2719.45321888412
];
184 -- 179 [
weight=5007.3786546113
];
225 -- 179 [
weight=8841.38511627907
];
213 -- 180 [
weight=8609.13858695652
];
218 -- 180 [
weight=12984.2745901639
];
229 -- 180 [
weight=12375.63671875
];
196 -- 183 [
weight=1021.98806451613
];
209 -- 200 [
weight=5077.18429487179
];
214 -- 201 [
weight=19200.9878787879
];
}
PS. I CCed the message to the igraph mailing list to ensure that they
are in the loop.
--
Sam Steingold (http://sds.podval.org/) on Ubuntu 12.04 (precise) X 11.0.11103000
http://www.childpsy.net/ http://ffii.org http://openvotingconsortium.org
http://iris.org.il http://www.memritv.org http://honestreporting.com
I don't like cats! -- Come on, you just don't know how to cook them!
- Re: [igraph] [BioC] Rgraphviz: how to read a \"dot\" file?,
Sam Steingold <=