Re: make trouble with octave-forge

[Robert Leach]

I tried it with and without.  Same error.  Here's the last attempt if 
you want to look through it.  I just now noticed an error in the 
configure output: (term.h: present but cannot be compiled).

Rob





plague: /usr/local/octave-forge-2004.02.12>./configure 
--with-path=/usr/local/octave-forge-2004.02.12 --prefix=/usr/local 
--enable-shared
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for mkoctfile... mkoctfile
cc1plus: warning: changing search order for system directory 
"/usr/local/include"
cc1plus: warning:   as it has already been specified as a non-system 
directory
retrieving compile and link flags from mkoctfile
checking for F77_FUNC... yes
checking for SLList.h... no
checking for lo_ieee_nan_value... yes
checking for quit.h... yes
checking for octave... octave
checking for OCTAVE_VERSION in Octave... 2.1.50
checking for octave_config_info('SHLEXT') in Octave... so
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/lanl/bin/install -c
checking for ranlib... ranlib
checking for strip... strip
checking how to run the C preprocessor... gcc -E
checking for X... libraries /usr/openwin/lib, headers 
/usr/openwin/include
checking whether -R must be followed by a space... no
checking for gethostbyname... no
checking for gethostbyname in -lnsl... yes
checking for connect... no
checking for connect in -lsocket... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for do_fortran_indexing in Octave... yes
checking for propagate_empty_matrices in Octave... yes
checking for ok_to_lose_imaginary_part in Octave... yes
checking for N-dim arrays... no
checking for class in Octave... no
checking for load/save functions in class... no
checking for Octave_map indexing... no
checking for makeinfo... makeinfo
checking for makeinfo --no-split... yes
checking for texi2dvi... texi2dvi
checking that texi2dvi runs... yes
checking for texi2dvi --clean... yes
checking for texi2html... texi2html
checking for texi2html --clean... yes
checking for dvipdf... dvipdf
checking for dvips... dvips
checking IEEE 754 compliance... yes
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... no
checking for unistd.h... yes
checking linux/soundcard.h usability... no
checking linux/soundcard.h presence... no
checking for linux/soundcard.h... no
checking for qh_qhull in -lqhull... no
checking jpeglib.h usability... yes
checking jpeglib.h presence... yes
checking for jpeglib.h... yes
checking for jpeg_std_error in -ljpeg... yes
checking png.h usability... yes
checking png.h presence... yes
checking for png.h... yes
checking for png_set_sig_bytes in -lpng... no
checking for socklen_t... yes
checking for octave_function(void)... no
checking term.h usability... no
checking term.h presence... yes
configure: WARNING: term.h: present but cannot be compiled
configure: WARNING: term.h: check for missing prerequisite headers?
configure: WARNING: term.h: proceeding with the preprocessor's result
configure: WARNING:     ## ------------------------------------ ##
configure: WARNING:     ## Report this to address@hidden ##
configure: WARNING:     ## ------------------------------------ ##
checking for term.h... yes
checking termcap.h usability... no
checking termcap.h presence... no
checking for termcap.h... no
checking for tgetnum in -ltermcap... yes
checking for ginac-config... no
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating octinst.sh
config.status: creating admin/RPM/octave-forge.spec

  "$prefix" is /usr/local
  "$exec_prefix" is ${prefix}

octave commands will install into the following directories:
   m-files:   /usr/local/octave-forge-2004.02.12
   oct-files: /usr/local/octave-forge-2004.02.12/oct
   binaries:  /usr/local/octave-forge-2004.02.12/bin
alternatives:
   m-files:   /usr/local/octave-forge-2004.02.12-alternatives
   oct-files: /usr/local/octave-forge-2004.02.12-alternatives/oct

shell commands will install into the following directories:
   binaries:  ${exec_prefix}/bin
   man pages: ${prefix}/man
   libraries: ${exec_prefix}/lib
   headers:   ${prefix}/include

octave-forge is configured with
   octave:      octave (version 2.1.50)
   mkoctfile:   mkoctfile for Octave 50
   X11 support: yes
   makeinfo:    makeinfo --no-split
   texi2dvi:    texi2dvi --clean
   texi2html:   texi2html -split_chapter -number
   mkdoc:       /usr/local/octave-forge-2004.02.12/admin/mkdoc
   mktexi:      /usr/local/octave-forge-2004.02.12/admin/mktexi
   dvips:       dvips
   dvipdf:      dvipdf
   audio capture: linux/soundcard.h not found
   geometry toolbox: Qhull not found --- see main/geometry/README
   read/write image formats: jpeg, libpng not found
   have term.h or termcap.h: yes
   symbolic toolbox: GiNaC not found --- see main/symbolic/INSTALL

find . -name NOINSTALL -print    # shows which toolboxes won't be 
installed

plague: /usr/local/octave-forge-2004.02.12>make
cd FIXES/ && make
make[1]: Entering directory `/home/local/octave-forge-2004.02.12/FIXES'
mkoctfile -DHAVE_OCTAVE_21 -v -DHAVE_IEEE754_COMPLIANCE sort.cc
g++ -c -fPIC -I/usr/local/include/octave-2.1.50 
-I/usr/local/include/octave-2.1.50/octave -I/usr/local/include -g -O2 
-Wall -DHAVE_OCTAVE_21 -DHAVE_IEEE754_COMPLIANCE sort.cc -o sort.o
cc1plus: warning: changing search order for system directory 
"/usr/local/include"
cc1plus: warning:   as it has already been specified as a non-system 
directory
sort.cc: In function `octave_value_list vec_sort(RowVector&, bool)':
sort.cc:192: warning: comparison between signed and unsigned integer
   expressions
sort.cc:230: warning: comparison between signed and unsigned integer
   expressions
sort.cc: In function `octave_value_list mx_sort(Matrix&, bool)':
sort.cc:406: warning: comparison between signed and unsigned integer
   expressions
sort.cc:450: warning: comparison between signed and unsigned integer
   expressions
g++ -shared -o sort.oct sort.o
mkoctfile -DHAVE_OCTAVE_21 -v rand.cc
g++ -c -fPIC -I/usr/local/include/octave-2.1.50 
-I/usr/local/include/octave-2.1.50/octave -I/usr/local/include -g -O2 
-Wall -DHAVE_OCTAVE_21 rand.cc -o rand.o
cc1plus: warning: changing search order for system directory 
"/usr/local/include"
cc1plus: warning:   as it has already been specified as a non-system 
directory
g++ -shared -o rand.oct rand.o
rm -f randn.oct
ln -s rand.oct randn.oct
make[1]: Leaving directory `/home/local/octave-forge-2004.02.12/FIXES'
cd extra/ && make
make[1]: Entering directory `/home/local/octave-forge-2004.02.12/extra'
make[2]: Entering directory 
`/home/local/octave-forge-2004.02.12/extra/graceplot'
mkoctfile -DHAVE_OCTAVE_21 -v __grcmd__.cc
g++ -c -fPIC -I/usr/local/include/octave-2.1.50 
-I/usr/local/include/octave-2.1.50/octave -I/usr/local/include -g -O2 
-Wall -DHAVE_OCTAVE_21 __grcmd__.cc -o __grcmd__.o
cc1plus: warning: changing search order for system directory 
"/usr/local/include"
cc1plus: warning:   as it has already been specified as a non-system 
directory
__grcmd__.cc: In function `int gr_sendcmd(std::basic_string<char,
   std::char_traits<char>, std::allocator<char> >)':
__grcmd__.cc:384: warning: `int ret' might be used uninitialized in this
   function
__grcmd__.cc: In function `octave_value_list F__grsetgraph__(const
   octave_value_list&, int)':
__grcmd__.cc:567: warning: unused variable `int n'
__grcmd__.cc: In function `octave_value_list F__grnewset__(const
   octave_value_list&, int)':
__grcmd__.cc:585: warning: unused variable `int lastindex'
__grcmd__.cc:585: warning: unused variable `int newset'
g++ -shared -o __grcmd__.oct __grcmd__.o
rm -f __grcla__.oct
ln -s __grcmd__.oct __grcla__.oct
rm -f __grclf__.oct
ln -s __grcmd__.oct __grclf__.oct
rm -f __grexit__.oct
ln -s __grcmd__.oct __grexit__.oct
rm -f __grfigure__.oct
ln -s __grcmd__.oct __grfigure__.oct
rm -f __grgetstat__.oct
ln -s __grcmd__.oct __grgetstat__.oct
rm -f __grhold__.oct
ln -s __grcmd__.oct __grhold__.oct
rm -f __grinit__.oct
ln -s __grcmd__.oct __grinit__.oct
rm -f __grishold__.oct
ln -s __grcmd__.oct __grishold__.oct
rm -f __grnewset__.oct
ln -s __grcmd__.oct __grnewset__.oct
rm -f __grsetgraph__.oct
ln -s __grcmd__.oct __grsetgraph__.oct
cat grace_octave_path.m.in | sed -e 
"s:@ALTMPATH@:/usr/local/octave-forge-2004.02.12-alternatives/:" > 
grace_octave_path.m
make[2]: Leaving directory 
`/home/local/octave-forge-2004.02.12/extra/graceplot'
make[2]: Entering directory 
`/home/local/octave-forge-2004.02.12/extra/linear-algebra'
mkoctfile -DHAVE_OCTAVE_21 -v -c chol.cc
g++ -c -fPIC -I/usr/local/include/octave-2.1.50 
-I/usr/local/include/octave-2.1.50/octave -I/usr/local/include -g -O2 
-Wall -DHAVE_OCTAVE_21 chol.cc -o chol.o
cc1plus: warning: changing search order for system directory 
"/usr/local/include"
cc1plus: warning:   as it has already been specified as a non-system 
directory
mkoctfile -DHAVE_OCTAVE_21 -v  -c ov-re-tri.cc -o ov-re-tri.o
g++ -c -fPIC -I/usr/local/include/octave-2.1.50 
-I/usr/local/include/octave-2.1.50/octave -I/usr/local/include -g -O2 
-Wall -DHAVE_OCTAVE_21 ov-re-tri.cc -o ov-re-tri.o
cc1plus: warning: changing search order for system directory 
"/usr/local/include"
cc1plus: warning:   as it has already been specified as a non-system 
directory
mkoctfile -DHAVE_OCTAVE_21 -v -o chol.oct chol.o ov-re-tri.o
g++ -shared -o chol.oct chol.o ov-re-tri.o
make[2]: Leaving directory 
`/home/local/octave-forge-2004.02.12/extra/linear-algebra'
make[2]: Entering directory 
`/home/local/octave-forge-2004.02.12/extra/mex'
mkoctfile -DHAVE_OCTAVE_21 -v -c  -o mex.o mex.cc
g++ -c -fPIC -I/usr/local/include/octave-2.1.50 
-I/usr/local/include/octave-2.1.50/octave -I/usr/local/include -g -O2 
-Wall -DHAVE_OCTAVE_21 mex.cc -o mex.o
cc1plus: warning: changing search order for system directory 
"/usr/local/include"
cc1plus: warning:   as it has already been specified as a non-system 
directory
mex.cc: In member function `mxArray* mxArray::field(const std::string&, 
int)
   const':
mex.cc:387: no matching function for call to `Octave_map::contents(const
   std::basic_string<char, std::char_traits<char>, std::allocator<char> 
>&)'
/usr/local/include/octave-2.1.50/octave/oct-map.h:98: candidates are:
   octave_value_list&
   Octave_map::contents(std::_Rb_tree_iterator<std::pair<const 
std::string,
   octave_value_list>, const std::pair<const std::string, 
octave_value_list>&,
   const std::pair<const std::string, octave_value_list>*>)
/usr/local/include/octave-2.1.50/octave/oct-map.h:101:
   octave_value_list
   Octave_map::contents(std::_Rb_tree_iterator<std::pair<const 
std::string,
   octave_value_list>, const std::pair<const std::string, 
octave_value_list>&,
   const std::pair<const std::string, octave_value_list>*>) const
mex.cc: In member function `void mxArray::field(const std::string&, int,
   mxArray*)':
mex.cc:401: invalid use of undefined type `struct Cell'
/usr/local/include/octave-2.1.50/octave/ov.h:43: forward declaration of 
`struct
   Cell'
mex.cc: In member function `mxArray* mex::make_value(int, int, const
   string_vector&)':
mex.cc:579: variable `Cell empty' has initializer but incomplete type
make[2]: *** [mex.o] Error 1
make[2]: Leaving directory 
`/home/local/octave-forge-2004.02.12/extra/mex'
make[1]: *** [mex/] Error 2
make[1]: Leaving directory `/home/local/octave-forge-2004.02.12/extra'
make: *** [extra/] Error 2
plague: /usr/local/octave-forge-2004.02.12>


On Wednesday, February 25, 2004, at 02:11  PM, Dmitri A. Sergatskov 
wrote:

> Robert Leach wrote:
> > Hi,
> > Anyone know how to resolve this?  I need the mex stuff.  It's the 
> > only reason I'm installing octave-forge.
> > Rob
>
> Did you compile octave with --enable-shared?
>
> Regards,
>
> Dmitri.
>
>
>
> -------------------------------------------------------------
> Octave is freely available under the terms of the GNU GPL.
>
> Octave's home on the web:  http://www.octave.org
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> -------------------------------------------------------------
=====================================================================
= Robert W. Leach                                                   =
= Los Alamos National Lab                                           =
= Bioscience Division: Bioinformatics & Computational Biology Group =
= MS M888                                                           =
= Los Alamos, NM 87545                                              =
= address@hidden                                                 =
= Work: 505-667-2307                                                =
= Cell: 505-310-3759                                                =
=====================================================================
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-------------------------------------------------------------
Octave is freely available under the terms of the GNU GPL.

Octave's home on the web:  http://www.octave.org
How to fund new projects:  http://www.octave.org/funding.html
Subscription information:  http://www.octave.org/archive.html
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