Re: Updating to latest Bioconductor release

[Roel Janssen]

On Wed, 2020-11-18 at 17:23 +0100, zimoun wrote:
> Hi Roel,
> 
> On Wed, 18 Nov 2020 at 17:13, Roel Janssen <roel@gnu.org> wrote:
> 
> > I pushed updates and fixes for various packages. Now I'm at r-
> > rhdf5lib.
> 
> Cool!
> 
> 
> > In 38881c9368595c5a894abe3695d98aabb1ef0029 you updated it to
> > 1.12.0,
> > but it seems that building has changed quite a bit.  I wonder how
> > it
> > could've built for you?
> 
> I have not.  The idea proposed by Ricardo was to update everything
> and
> let Cuirass build.  BTW, I do not have enough power at hand to
> rebuild
> all the BioConductor packages.
> 

Okay.  Then I'll look into it.  I currently have only these left as
changed in my tree:
- r-atacseqqc: Needs r-rhdf5lib.
- r-cytoml: Needs r-rhdf5lib.
- r-scater: Needs r-rhdf5lib.
- r-scuttle (new package for r-scran): Needs r-rhdf5lib.
- r-scran: Needs r-scuttle.

So it seems we are almost there.

I pushed the rest to the wip-r branch.

Kind regards,
Roel Janssen