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01/06: gnu: Add r-enmix.
From: |
guix-commits |
Subject: |
01/06: gnu: Add r-enmix. |
Date: |
Thu, 30 Mar 2023 08:43:03 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit e93a570fd6f2c81cca0dbbbe3faf36e8f5afffe2
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Mar 30 14:29:33 2023 +0200
gnu: Add r-enmix.
* gnu/packages/bioconductor.scm (r-enmix): New variable.
---
gnu/packages/bioconductor.scm | 42 ++++++++++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5a59ab86eb..a224eecd70 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6454,6 +6454,48 @@ other types of genomic data that produce counts,
including ChIP-seq, SAGE and
CAGE.")
(license license:gpl2+)))
+(define-public r-enmix
+ (package
+ (name "r-enmix")
+ (version "1.34.02")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ENmix" version))
+ (sha256
+ (base32
+ "0rn541xfsxfdyzy3dn727bwrfpkgp12282lax7xg1j8584mk4pcf"))))
+ (properties `((upstream-name . "ENmix")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-annotationhub
+ r-biobase
+ r-doparallel
+ r-dynamictreecut
+ r-experimenthub
+ r-foreach
+ r-genefilter
+ r-geneplotter
+ r-gplots
+ r-gtools
+ r-illuminaio
+ r-impute
+ r-iranges
+ r-matrixstats
+ r-minfi
+ r-preprocesscore
+ r-quadprog
+ r-rpmm
+ r-s4vectors
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page
"https://bioconductor.org/packages/release/bioc/html/ENmix.html")
+ (synopsis
+ "Quality control and analysis tools for Illumina DNA methylation
BeadChip")
+ (description
+ "This package provides tools for quality control, analysis and
+visualization of Illumina DNA methylation array data.")
+ (license license:artistic2.0)))
+
(define-public r-ensembldb
(package
(name "r-ensembldb")
- branch master updated (96e81b18b9 -> caf163536a), guix-commits, 2023/03/30
- 02/06: gnu: Add r-flowsorted-blood-450k., guix-commits, 2023/03/30
- 05/06: gnu: Add r-illuminahumanmethylationepicanno-ilm10b5-hg38., guix-commits, 2023/03/30
- 06/06: gnu: Add r-maxprobes., guix-commits, 2023/03/30
- 04/06: gnu: Add r-shinymethyl., guix-commits, 2023/03/30
- 01/06: gnu: Add r-enmix.,
guix-commits <=
- 03/06: gnu: Add r-flowsorted-blood-epic., guix-commits, 2023/03/30