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12/19: gnu: java-picard: Replace reference to %build-inputs.
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guix-commits |
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Subject: |
12/19: gnu: java-picard: Replace reference to %build-inputs. |
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Date: |
Fri, 3 Dec 2021 18:33:48 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit 64aafe4bc50a39ade66674b487ebc5061905748a
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Dec 4 00:06:43 2021 +0100
gnu: java-picard: Replace reference to %build-inputs.
* gnu/packages/bioinformatics.scm (java-picard): Use a gexp.
---
gnu/packages/bioinformatics.scm | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b8ab2e9..ce9bede 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4526,12 +4526,12 @@ manipulating HTS data.")
;; Tests require jacoco:coverage.
#:tests? #f
#:make-flags
- (list (string-append "-Dhtsjdk_lib_dir="
- (assoc-ref %build-inputs "java-htsjdk")
- "/share/java/htsjdk/")
- "-Dhtsjdk-classes=dist/tmp"
- (string-append "-Dhtsjdk-version="
- ,(package-version java-htsjdk)))
+ ,#~(list (string-append "-Dhtsjdk_lib_dir="
+ #$(this-package-input "java-htsjdk")
+ "/share/java/htsjdk/")
+ "-Dhtsjdk-classes=dist/tmp"
+ (string-append "-Dhtsjdk-version="
+ #$(package-version java-htsjdk)))
#:jdk ,icedtea-8
#:phases
(modify-phases %standard-phases
- branch core-updates-frozen updated (6d4f260 -> 114eb98), guix-commits, 2021/12/03
- 01/19: gnu: qtltools: Replace references to %build-inputs., guix-commits, 2021/12/03
- 02/19: gnu: bedtools: Remove reference to %outputs., guix-commits, 2021/12/03
- 03/19: gnu: bless: Remove trailing #T from snippet and build phases., guix-commits, 2021/12/03
- 04/19: gnu: bless: Remove reference to %build-inputs., guix-commits, 2021/12/03
- 05/19: gnu: bowtie: Remove reference to %outputs., guix-commits, 2021/12/03
- 06/19: gnu: bowtie1: Replace reference to %outputs., guix-commits, 2021/12/03
- 07/19: gnu: cd-hit: Replace reference to %outputs., guix-commits, 2021/12/03
- 10/19: gnu: fxtract: Replace reference to %outputs., guix-commits, 2021/12/03
- 12/19: gnu: java-picard: Replace reference to %build-inputs.,
guix-commits <=
- 13/19: gnu: fastp: Replace reference to %outputs., guix-commits, 2021/12/03
- 14/19: gnu: jellyfish: Replace reference to %outputs., guix-commits, 2021/12/03
- 18/19: gnu: mash: Move htslib and capnproto to regular inputs., guix-commits, 2021/12/03
- 19/19: gnu: mash: Replace references to %build-inputs., guix-commits, 2021/12/03
- 15/19: gnu: mafft: Replace references to %build-inputs and %outputs., guix-commits, 2021/12/03
- 16/19: gnu: mafft: Remove trailing #T., guix-commits, 2021/12/03
- 17/19: gnu: mash: Simplify snippet., guix-commits, 2021/12/03
- 09/19: gnu: delly: Replace reference to %outputs., guix-commits, 2021/12/03
- 11/19: gnu: java-htsjdk: Replace reference to %outputs., guix-commits, 2021/12/03
- 08/19: gnu: libbigwig: Replace reference to %outputs., guix-commits, 2021/12/03