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04/19: gnu: bless: Remove reference to %build-inputs.
From: |
guix-commits |
Subject: |
04/19: gnu: bless: Remove reference to %build-inputs. |
Date: |
Fri, 3 Dec 2021 18:33:45 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit f5c38ee45f04913dbb930c8ae93eab45e53bfa90
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Dec 3 23:51:16 2021 +0100
gnu: bless: Remove reference to %build-inputs.
* gnu/packages/bioinformatics.scm (bless)[arguments]: Replace reference to
%build-inputs with a gexp. Use the dynamic library of zlib while we're at
it.
[inputs]: Remove zlib:static.
---
gnu/packages/bioinformatics.scm | 21 ++++++++++-----------
1 file changed, 10 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e23f3f3..47d958f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1917,17 +1917,17 @@ confidence to have in an alignment.")
(delete-file-recursively ".git")))))
(build-system gnu-build-system)
(arguments
- '(#:tests? #f ;no "check" target
+ `(#:tests? #f ;no "check" target
#:make-flags
- (list (string-append "ZLIB="
- (assoc-ref %build-inputs "zlib:static")
- "/lib/libz.a")
- (string-append "LDFLAGS="
- (string-join '("-lboost_filesystem"
- "-lboost_system"
- "-lboost_iostreams"
- "-lz"
- "-fopenmp"))))
+ ,#~(list (string-append "ZLIB="
+ #$(this-package-input "zlib")
+ "/lib/libz.so")
+ (string-append "LDFLAGS="
+ (string-join '("-lboost_filesystem"
+ "-lboost_system"
+ "-lboost_iostreams"
+ "-lz"
+ "-fopenmp"))))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'do-not-build-bundled-pigz
@@ -1959,7 +1959,6 @@ confidence to have in an alignment.")
("boost" ,boost)
("sparsehash" ,sparsehash)
("pigz" ,pigz)
- ("zlib:static" ,zlib "static")
("zlib" ,zlib)))
(supported-systems '("x86_64-linux"))
(home-page "https://sourceforge.net/p/bless-ec/wiki/Home/")
- branch core-updates-frozen updated (6d4f260 -> 114eb98), guix-commits, 2021/12/03
- 01/19: gnu: qtltools: Replace references to %build-inputs., guix-commits, 2021/12/03
- 02/19: gnu: bedtools: Remove reference to %outputs., guix-commits, 2021/12/03
- 03/19: gnu: bless: Remove trailing #T from snippet and build phases., guix-commits, 2021/12/03
- 04/19: gnu: bless: Remove reference to %build-inputs.,
guix-commits <=
- 05/19: gnu: bowtie: Remove reference to %outputs., guix-commits, 2021/12/03
- 06/19: gnu: bowtie1: Replace reference to %outputs., guix-commits, 2021/12/03
- 07/19: gnu: cd-hit: Replace reference to %outputs., guix-commits, 2021/12/03
- 10/19: gnu: fxtract: Replace reference to %outputs., guix-commits, 2021/12/03
- 12/19: gnu: java-picard: Replace reference to %build-inputs., guix-commits, 2021/12/03
- 13/19: gnu: fastp: Replace reference to %outputs., guix-commits, 2021/12/03
- 14/19: gnu: jellyfish: Replace reference to %outputs., guix-commits, 2021/12/03
- 18/19: gnu: mash: Move htslib and capnproto to regular inputs., guix-commits, 2021/12/03
- 19/19: gnu: mash: Replace references to %build-inputs., guix-commits, 2021/12/03
- 15/19: gnu: mafft: Replace references to %build-inputs and %outputs., guix-commits, 2021/12/03