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11/19: gnu: java-htsjdk: Replace reference to %outputs.
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guix-commits |
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Subject: |
11/19: gnu: java-htsjdk: Replace reference to %outputs. |
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Date: |
Fri, 3 Dec 2021 18:33:47 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit a3b00a21c028c648a591fd480a73d478985dc37c
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Dec 4 00:03:54 2021 +0100
gnu: java-htsjdk: Replace reference to %outputs.
* gnu/packages/bioinformatics.scm (java-htsjdk)[arguments]: Use a gexp.
---
gnu/packages/bioinformatics.scm | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7f8fffc..b8ab2e9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4391,8 +4391,7 @@ from high-throughput sequencing assays.")
`(#:tests? #f ; test require Internet access
#:jdk ,icedtea-8
#:make-flags
- (list (string-append "-Ddist=" (assoc-ref %outputs "out")
- "/share/java/htsjdk/"))
+ ,#~(list (string-append "-Ddist=" #$output "/share/java/htsjdk/"))
#:build-target "all"
#:phases
(modify-phases %standard-phases
- 10/19: gnu: fxtract: Replace reference to %outputs., (continued)
- 10/19: gnu: fxtract: Replace reference to %outputs., guix-commits, 2021/12/03
- 12/19: gnu: java-picard: Replace reference to %build-inputs., guix-commits, 2021/12/03
- 13/19: gnu: fastp: Replace reference to %outputs., guix-commits, 2021/12/03
- 14/19: gnu: jellyfish: Replace reference to %outputs., guix-commits, 2021/12/03
- 18/19: gnu: mash: Move htslib and capnproto to regular inputs., guix-commits, 2021/12/03
- 19/19: gnu: mash: Replace references to %build-inputs., guix-commits, 2021/12/03
- 15/19: gnu: mafft: Replace references to %build-inputs and %outputs., guix-commits, 2021/12/03
- 16/19: gnu: mafft: Remove trailing #T., guix-commits, 2021/12/03
- 17/19: gnu: mash: Simplify snippet., guix-commits, 2021/12/03
- 09/19: gnu: delly: Replace reference to %outputs., guix-commits, 2021/12/03
- 11/19: gnu: java-htsjdk: Replace reference to %outputs.,
guix-commits <=
- 08/19: gnu: libbigwig: Replace reference to %outputs., guix-commits, 2021/12/03