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08/10: gnu: Add r-flowsom.
From: |
guix-commits |
Subject: |
08/10: gnu: Add r-flowsom. |
Date: |
Wed, 24 Jul 2019 17:06:02 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 1502751b3220feda44e34c07c617086538ac1296
Author: zimoun <address@hidden>
Date: Wed Jul 24 20:22:02 2019 +0200
gnu: Add r-flowsom.
* gnu/packages/bioconductor.scm (r-flowsom): New variable.
Signed-off-by: Ricardo Wurmus <address@hidden>
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ece5097..ad48cca 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4904,3 +4904,31 @@ with flow cytometry data.")
Cytometry data using non-parametric clustering and segmented-regression-based
change point detection.")
(license license:artistic2.0)))
+
+(define-public r-flowsom
+ (package
+ (name "r-flowsom")
+ (version "1.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "FlowSOM" version))
+ (sha256
+ (base32
+ "03wl3xk7g7vajc4kkrqa0gsbjfxlqr918qi849h5nir31963398l"))))
+ (properties `((upstream-name . "FlowSOM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-consensusclusterplus" ,r-consensusclusterplus)
+ ("r-flowcore" ,r-flowcore)
+ ("r-flowutils" ,r-flowutils)
+ ("r-igraph" ,r-igraph)
+ ("r-tsne" ,r-tsne)
+ ("r-xml" ,r-xml)))
+ (home-page "https://bioconductor.org/packages/FlowSOM/")
+ (synopsis "Visualize and interpret cytometry data")
+ (description
+ "FlowSOM offers visualization options for cytometry data, by using
+self-organizing map clustering and minimal spanning trees.")
+ (license license:gpl2+)))
- branch master updated (97bc8c4 -> a0efa06), guix-commits, 2019/07/24
- 01/10: gnu: Add r-umap., guix-commits, 2019/07/24
- 02/10: gnu: Add r-kableextra., guix-commits, 2019/07/24
- 06/10: gnu: Add r-consensusclusterplus., guix-commits, 2019/07/24
- 07/10: gnu: Add r-flowmeans., guix-commits, 2019/07/24
- 03/10: gnu: Add r-all., guix-commits, 2019/07/24
- 10/10: gnu: Add r-depecher., guix-commits, 2019/07/24
- 09/10: gnu: Add r-mixomics., guix-commits, 2019/07/24
- 04/10: gnu: Add r-flowcore., guix-commits, 2019/07/24
- 08/10: gnu: Add r-flowsom.,
guix-commits <=
- 05/10: gnu: Add r-flowutils., guix-commits, 2019/07/24