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03/10: gnu: Add r-all.
From: |
guix-commits |
Subject: |
03/10: gnu: Add r-all. |
Date: |
Wed, 24 Jul 2019 17:06:01 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit ad8f46c69efd24915d380dba663c9f24746de1fc
Author: zimoun <address@hidden>
Date: Wed Jul 24 20:21:56 2019 +0200
gnu: Add r-all.
* gnu/packages/bioconductor.scm (r-all): New variable.
Signed-off-by: Ricardo Wurmus <address@hidden>
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e5a2d66..649b64a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -865,6 +865,34 @@ which were then sequenced to a depth of ~4 million reads
per library,
resulting in a complete gene expression profile for each cell.")
(license license:artistic2.0)))
+(define-public r-all
+ (package
+ (name "r-all")
+ (version "1.26.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/experiment/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/experiment/src/contrib/"
+ "ALL_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1z7kpjw4ndj6fkxwvhqf3gawhrn26ksrlns7j2c78qzxqmjndik9"))))
+ (properties `((upstream-name . "ALL")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)))
+ (home-page "https://bioconductor.org/packages/ALL")
+ (synopsis "Acute Lymphoblastic Leukemia data from the Ritz laboratory")
+ (description
+ "The data consist of microarrays from 128 different individuals with
+@dfn{acute lymphoblastic leukemia} (ALL). A number of additional covariates
+are available. The data have been normalized (using rma) and it is the
+jointly normalized data that are available here. The data are presented in
+the form of an @code{exprSet} object.")
+ (license license:artistic2.0)))
+
;;; Packages
- branch master updated (97bc8c4 -> a0efa06), guix-commits, 2019/07/24
- 01/10: gnu: Add r-umap., guix-commits, 2019/07/24
- 02/10: gnu: Add r-kableextra., guix-commits, 2019/07/24
- 06/10: gnu: Add r-consensusclusterplus., guix-commits, 2019/07/24
- 07/10: gnu: Add r-flowmeans., guix-commits, 2019/07/24
- 03/10: gnu: Add r-all.,
guix-commits <=
- 10/10: gnu: Add r-depecher., guix-commits, 2019/07/24
- 09/10: gnu: Add r-mixomics., guix-commits, 2019/07/24
- 04/10: gnu: Add r-flowcore., guix-commits, 2019/07/24
- 08/10: gnu: Add r-flowsom., guix-commits, 2019/07/24
- 05/10: gnu: Add r-flowutils., guix-commits, 2019/07/24