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13/14: gnu: Add r-rqc.
From: |
guix-commits |
Subject: |
13/14: gnu: Add r-rqc. |
Date: |
Fri, 10 May 2019 07:34:37 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 496b024fdecfaccb2200dc7e6aee798c1165d6cd
Author: Ricardo Wurmus <address@hidden>
Date: Fri May 10 13:26:05 2019 +0200
gnu: Add r-rqc.
* gnu/packages/bioconductor.scm (r-rqc): New variable.
---
gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 62fd113..792fc68 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4507,3 +4507,44 @@ short genomic reads. It covers a complete workflow
starting from raw sequence
reads, over creation of alignments and quality control plots, to the
quantification of genomic regions of interest.")
(license license:gpl2)))
+
+(define-public r-rqc
+ (package
+ (name "r-rqc")
+ (version "1.18.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rqc" version))
+ (sha256
+ (base32
+ "09kyn5nc2fqfdm3q07h0x2jyh24vsq5sxxm63ir1lvv250lmal4g"))))
+ (properties `((upstream-name . "Rqc")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biocstyle" ,r-biocstyle)
+ ("r-biostrings" ,r-biostrings)
+ ("r-biovizbase" ,r-biovizbase)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-iranges" ,r-iranges)
+ ("r-knitr" ,r-knitr)
+ ("r-markdown" ,r-markdown)
+ ("r-plyr" ,r-plyr)
+ ("r-rcpp" ,r-rcpp)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shiny" ,r-shiny)
+ ("r-shortread" ,r-shortread)))
+ (home-page "https://github.com/labbcb/Rqc")
+ (synopsis "Quality control tool for high-throughput sequencing data")
+ (description
+ "Rqc is an optimized tool designed for quality control and assessment of
+high-throughput sequencing data. It performs parallel processing of entire
+files and produces a report which contains a set of high-resolution
+graphics.")
+ (license license:gpl2+)))
- branch master updated (b40a36b -> d13f3a0), guix-commits, 2019/05/10
- 01/14: gnu: Add r-iclusterplus., guix-commits, 2019/05/10
- 02/14: gnu: Add r-rbowtie., guix-commits, 2019/05/10
- 12/14: gnu: Add r-quasr., guix-commits, 2019/05/10
- 05/14: gnu: Add r-plot3d., guix-commits, 2019/05/10
- 07/14: gnu: Add r-refmanager., guix-commits, 2019/05/10
- 13/14: gnu: Add r-rqc.,
guix-commits <=
- 06/14: gnu: Add r-ggfortify., guix-commits, 2019/05/10
- 11/14: gnu: Add r-rhisat2., guix-commits, 2019/05/10
- 03/14: gnu: Add r-dalex., guix-commits, 2019/05/10
- 09/14: gnu: Add r-xgboost., guix-commits, 2019/05/10
- 14/14: gnu: gnome-tweak-tool: Update to 3.28.1., guix-commits, 2019/05/10
- 04/14: gnu: Add r-enrichr., guix-commits, 2019/05/10
- 08/14: gnu: Add r-citr., guix-commits, 2019/05/10
- 10/14: gnu: Add r-sgseq., guix-commits, 2019/05/10