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12/14: gnu: Add r-quasr.
From: |
guix-commits |
Subject: |
12/14: gnu: Add r-quasr. |
Date: |
Fri, 10 May 2019 07:34:37 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 5e0241db84afdabaa455634924a48528ed8ebbe3
Author: Ricardo Wurmus <address@hidden>
Date: Fri May 10 13:16:09 2019 +0200
gnu: Add r-quasr.
* gnu/packages/bioconductor.scm (r-quasr): New variable.
---
gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e534b33..62fd113 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4462,3 +4462,48 @@ aligner by Kim et al. (2015). The package contains
wrapper functions to
create a genome index and to perform the read alignment to the generated
index.")
(license license:gpl3)))
+
+(define-public r-quasr
+ (package
+ (name "r-quasr")
+ (version "1.24.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "QuasR" version))
+ (sha256
+ (base32
+ "02mdg3mq99gsqq181j3sfh9pid5l7dqjl68rk4fpc1rvm128y743"))))
+ (properties `((upstream-name . "QuasR")))
+ (build-system r-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocmanager" ,r-biocmanager)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rbowtie" ,r-rbowtie)
+ ("r-rhisat2" ,r-rhisat2)
+ ("r-rhtslib" ,r-rhtslib)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shortread" ,r-shortread)))
+ (home-page "https://bioconductor.org/packages/QuasR/")
+ (synopsis "Quantify and annotate short reads in R")
+ (description
+ "This package provides a framework for the quantification and analysis of
+short genomic reads. It covers a complete workflow starting from raw sequence
+reads, over creation of alignments and quality control plots, to the
+quantification of genomic regions of interest.")
+ (license license:gpl2)))
- branch master updated (b40a36b -> d13f3a0), guix-commits, 2019/05/10
- 01/14: gnu: Add r-iclusterplus., guix-commits, 2019/05/10
- 02/14: gnu: Add r-rbowtie., guix-commits, 2019/05/10
- 12/14: gnu: Add r-quasr.,
guix-commits <=
- 05/14: gnu: Add r-plot3d., guix-commits, 2019/05/10
- 07/14: gnu: Add r-refmanager., guix-commits, 2019/05/10
- 13/14: gnu: Add r-rqc., guix-commits, 2019/05/10
- 06/14: gnu: Add r-ggfortify., guix-commits, 2019/05/10
- 11/14: gnu: Add r-rhisat2., guix-commits, 2019/05/10
- 03/14: gnu: Add r-dalex., guix-commits, 2019/05/10
- 09/14: gnu: Add r-xgboost., guix-commits, 2019/05/10
- 14/14: gnu: gnome-tweak-tool: Update to 3.28.1., guix-commits, 2019/05/10
- 04/14: gnu: Add r-enrichr., guix-commits, 2019/05/10
- 08/14: gnu: Add r-citr., guix-commits, 2019/05/10