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06/14: gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages biocon
From: |
guix-commits |
Subject: |
06/14: gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor). |
Date: |
Wed, 6 Mar 2019 15:45:58 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c3adc8305465318e3d83f2a881ab54076e288a0a
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 6 21:26:54 2019 +0100
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to
here.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 32 --------------------------------
2 files changed, 32 insertions(+), 32 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6a58391..936f521 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -232,6 +232,38 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are \"active\" by
default." )
(license license:artistic2.0)))
+(define-public r-bsgenome-mmusculus-ucsc-mm10
+ (package
+ (name "r-bsgenome-mmusculus-ucsc-mm10")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Mmusculus.UCSC.mm10_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
+ (properties
+ `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
+ (synopsis "Full genome sequences for Mouse")
+ (description
+ "This package provides full genome sequences for Mus
+musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
+in Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-org-dr-eg-db
(package
(name "r-org-dr-eg-db")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 51bb3bb..ef65dd9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8105,38 +8105,6 @@ plots the corresponding sequence logo as introduced by
Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
-(define-public r-bsgenome-mmusculus-ucsc-mm10
- (package
- (name "r-bsgenome-mmusculus-ucsc-mm10")
- (version "1.4.0")
- (source (origin
- (method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "BSgenome.Mmusculus.UCSC.mm10_"
- version ".tar.gz"))
- (sha256
- (base32
- "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
- (properties
- `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
- (build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
- (propagated-inputs
- `(("r-bsgenome" ,r-bsgenome)))
- (home-page
- "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
- (synopsis "Full genome sequences for Mouse")
- (description
- "This package provides full genome sequences for Mus
-musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
-in Biostrings objects.")
- (license license:artistic2.0)))
-
(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
(package
(name "r-txdb-mmusculus-ucsc-mm10-knowngene")
- 02/14: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor)., (continued)
- 02/14: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 01/14: gnu: r-geneplotter: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 04/14: gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 05/14: gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 09/14: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 10/14: gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 12/14: gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 14/14: gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 07/14: gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 06/14: gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).,
guix-commits <=
- 08/14: gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 11/14: gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06