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07/14: gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages biocondu
From: |
guix-commits |
Subject: |
07/14: gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor). |
Date: |
Wed, 6 Mar 2019 15:45:58 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit b7d93cf5087642103ae4a1f19ae38876d46c2b6c
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 6 21:29:20 2019 +0100
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 32 --------------------------------
2 files changed, 32 insertions(+), 32 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 936f521..24504d0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -33,6 +33,38 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages web))
+(define-public r-bsgenome-celegans-ucsc-ce6
+ (package
+ (name "r-bsgenome-celegans-ucsc-ce6")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Celegans.UCSC.ce6_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
+ (properties
+ `((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
+ (synopsis "Full genome sequences for Worm")
+ (description
+ "This package provides full genome sequences for Caenorhabditis
+elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm6")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ef65dd9..efe4c9b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10,
December 2011)
based on the knownGene track.")
(license license:artistic2.0)))
-(define-public r-bsgenome-celegans-ucsc-ce6
- (package
- (name "r-bsgenome-celegans-ucsc-ce6")
- (version "1.4.0")
- (source (origin
- (method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "BSgenome.Celegans.UCSC.ce6_"
- version ".tar.gz"))
- (sha256
- (base32
- "0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
- (properties
- `((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
- (build-system r-build-system)
- ;; As this package provides little more than a very large data file it
- ;; doesn't make sense to build substitutes.
- (arguments `(#:substitutable? #f))
- (propagated-inputs
- `(("r-bsgenome" ,r-bsgenome)))
- (home-page
- "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
- (synopsis "Full genome sequences for Worm")
- (description
- "This package provides full genome sequences for Caenorhabditis
-elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
-objects.")
- (license license:artistic2.0)))
-
(define-public r-bsgenome-celegans-ucsc-ce10
(package
(name "r-bsgenome-celegans-ucsc-ce10")
- 03/14: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor)., (continued)
- 03/14: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 02/14: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 01/14: gnu: r-geneplotter: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 04/14: gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 05/14: gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 09/14: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 10/14: gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 12/14: gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 14/14: gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 07/14: gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).,
guix-commits <=
- 06/14: gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 08/14: gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 11/14: gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06