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01/14: gnu: r-geneplotter: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
01/14: gnu: r-geneplotter: Move to (gnu packages bioconductor). |
Date: |
Wed, 6 Mar 2019 15:45:57 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit bfb93b4889a2352f47df56dedf0a10cd2dfc441c
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 6 21:13:38 2019 +0100
gnu: r-geneplotter: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
---
gnu/packages/bioconductor.scm | 27 ++++++++++++++++++++++++++-
gnu/packages/bioinformatics.scm | 25 -------------------------
2 files changed, 26 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bbfe68c..f3ea87c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <address@hidden>
;;; Copyright © 2016, 2017, 2018 Roel Janssen <address@hidden>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <address@hidden>
+;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -349,6 +349,31 @@ customizable permutation tests to assess the association
between genomic
region sets and other genomic features.")
(license license:artistic2.0)))
+(define-public r-geneplotter
+ (package
+ (name "r-geneplotter")
+ (version "1.60.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "geneplotter" version))
+ (sha256
+ (base32
+ "10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotate" ,r-annotate)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-lattice" ,r-lattice)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)))
+ (home-page "https://bioconductor.org/packages/geneplotter")
+ (synopsis "Graphics functions for genomic data")
+ (description
+ "This package provides functions for plotting genomic data.")
+ (license license:artistic2.0)))
+
(define-public r-diffbind
(package
(name "r-diffbind")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 09d3bf2..73d6ecf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6347,31 +6347,6 @@ between two different types of motif instances using as
much relevant
information as possible.")
(license (list license:gpl2+ license:gpl3+))))
-(define-public r-geneplotter
- (package
- (name "r-geneplotter")
- (version "1.60.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "geneplotter" version))
- (sha256
- (base32
- "10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotate" ,r-annotate)
- ("r-annotationdbi" ,r-annotationdbi)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-lattice" ,r-lattice)
- ("r-rcolorbrewer" ,r-rcolorbrewer)))
- (home-page "https://bioconductor.org/packages/geneplotter")
- (synopsis "Graphics functions for genomic data")
- (description
- "This package provides functions for plotting genomic data.")
- (license license:artistic2.0)))
-
(define-public r-genefilter
(package
(name "r-genefilter")
- branch master updated (9f8698a -> 8035819), guix-commits, 2019/03/06
- 03/14: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 02/14: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 01/14: gnu: r-geneplotter: Move to (gnu packages bioconductor).,
guix-commits <=
- 04/14: gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 05/14: gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 09/14: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 10/14: gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 12/14: gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 14/14: gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 07/14: gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 06/14: gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 08/14: gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06