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[igraph] Filter the number of hops
From: |
Nirmal Raman Kannaiyan |
Subject: |
[igraph] Filter the number of hops |
Date: |
Tue, 11 Apr 2017 16:38:30 +0200 |
Dear All,
I have a network generated based on PPI for a list of candidate genes with
order = 2 (neighbourhood).
neighborhood(ppi.graph,order,which(V(ppi.graph)$name %in% genes))
What I really would like is to filter this network such that, I include nodes
that have 1 or 2 hops between my Candidate Gene List and not include all the
neighbours.
Any suggestions on how to arrive at this minimal network with only two hops to
connect my candidate gene list.
Thanks and regards,
Nirmal
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