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Octave 3.03 build Problems
From: |
David Laxer |
Subject: |
Octave 3.03 build Problems |
Date: |
Thu, 05 Mar 2009 16:54:03 -0500 |
User-agent: |
Thunderbird 2.0.0.19 (X11/20090108) |
I'm getting the following linker error building either Octave 3.0.3 or
3.1.53 on RHEL5:
/usr/bin/ld: /opt/UMFPACK/Lib/libumfpack.a(umfpack_di_defaults.o):
relocation R_X86_64_32 against `a local symbol' can not be used when
making a shared object; recompile with -fPIC
/opt/UMFPACK/Lib/libumfpack.a: could not read symbols: Bad value
I tried compiling SuiteSpare and Octave with -fPIC, but it didn't help.
gcc is version 4.1.2-44
address@hidden SuiteSparse]# gcc --version
gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)
Here's the config line to Octave:
./configure CXXFLAGS=-fPIC CFLAGS=-fPIC
CPPFLAGS="-I/opt/qhull-2003.1/src -I/opt/ftgl-2.1.3~rc5/src
-I/opt/glpk-4.36/include -I/opt/SuiteSparse/UFconfig
-I/opt/SuiteSparse/SPQR/Include -I/opt/SuiteSparse/COLAMD/Include
-I/opt/SuiteSparse/CXSparse/Include -I/opt/SuiteSparse/AMD/Include
-I/opt/SuiteSparse/CSparse/Include -I/opt/SuiteSparse/CCOLAMD/Include
-I/opt/SuiteSparse/LDL/Include
-I/opt/SuiteSparse/CXSparse_newfiles/Include
-I/opt/SuiteSparse/BTF/Include -I/opt/SuiteSparse/KLU/Include
-I/opt/SuiteSparse/CAMD/Include -I/opt/SuiteSparse/UMFPACK/Include"
LDFLAGS="-L/usr/lib64 -L/opt/AMD/Lib -L/opt/UMFPACK/Lib
-L/opt/SuiteSparse/COLAMD/Lib -L/opt/SuiteSparse/CCOLAMD/Lib
-L/opt/SuiteSparse/CXSparse/Source -L/opt/5-1.6.8-linux-static/lib
-L/opt/metis-4.0" --with-blas=usr/lib64/libblas.a
... and the build parameters:
Octave is now configured for x86_64-unknown-linux-gnu
Source directory: .
Installation prefix: /usr/local
C compiler: gcc -Wall -W -Wshadow -fPIC
C++ compiler: g++ -Wall -W -Wshadow -Wold-style-cast -fPIC
Fortran compiler: gfortran -O
Fortran libraries: -L/usr/lib64 -L/opt/AMD/Lib -L/opt/UMFPACK/Lib
-L/opt/SuiteSparse/CHOLMOD/Lib -L/opt/SuiteSparse/COLAMD/Lib
-L/opt/SuiteSparse/CCOLAMD/Lib -L/opt/SuiteSparse/CXSparse/Source
-L/opt/5-1.6.8-linux-static/lib -L/opt/metis-4.0
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64
-L/lib/../lib64 -L/usr/lib/../lib64 -lz -lgfortranbegin -lgfortran -lm
BLAS libraries: -lblas
FFTW libraries: -lfftw3
GLPK libraries: -lglpk
UMFPACK libraries: -lumfpack
AMD libraries: -lamd
CAMD libraries:
COLAMD libraries: -lcolamd
CCOLAMD libraries: -lccolamd
CHOLMOD libraries: -lcholmod
CXSPARSE libraries:
HDF5 libraries:
CURL libraries: -lcurl
REGEX libraries: -lpcre
QHULL libraries: -lqhull
LIBS: -lreadline -lncurses -ldl -lz -lm
Default pager: less
gnuplot: gnuplot
Do internal array bounds checking: false
Build static libraries: false
Build shared libraries: true
Dynamic Linking: true (dlopen)
Include support for GNU readline: true
64-bit array dims and indexing: false
g++ -shared -Wl,-soname -Wl,liboctave.so -o liboctave.so \
pic/Bounds.o pic/CollocWt.o pic/DASPK.o pic/DASRT.o pic/DASSL.o
pic/FEGrid.o pic/LinConst.o pic/LSODE.o pic/NLEqn.o pic/ODES.o
pic/Quad.o pic/Range.o pic/data-conv.o pic/dir-ops.o pic/file-ops.o
pic/file-stat.o pic/glob-match.o pic/idx-vector.o pic/lo-ieee.o
pic/lo-mappers.o pic/lo-specfun.o pic/lo-sysdep.o pic/lo-utils.o
pic/mach-info.o pic/oct-alloc.o pic/oct-env.o pic/oct-fftw.o
pic/oct-group.o pic/oct-md5.o pic/oct-passwd.o pic/oct-rand.o
pic/oct-shlib.o pic/oct-spparms.o pic/oct-syscalls.o pic/oct-time.o
pic/oct-uname.o pic/prog-args.o pic/so-array.o pic/sparse-sort.o
pic/sparse-util.o pic/str-vec.o pic/Array.o pic/ArrayN.o
pic/DiagArray2.o pic/MArray.o pic/MArray2.o pic/MArrayN.o
pic/MDiagArray2.o pic/base-lu.o pic/oct-sort.o pic/sparse-base-lu.o
pic/sparse-base-chol.o pic/sparse-dmsolve.o pic/Array-C.o pic/Array-b.o
pic/Array-ch.o pic/Array-i.o pic/Array-d.o pic/Array-s.o pic/Array-so.o
pic/Array-str.o pic/Array-idx-vec.o pic/MArray-C.o pic/MArray-ch.o
pic/MArray-i.o pic/MArray-d.o pic/MArray-s.o pic/MSparse-C.o
pic/MSparse-d.o pic/Sparse-C.o pic/Sparse-b.o pic/Sparse-d.o
pic/oct-inttypes.o pic/Array-util.o pic/CColVector.o pic/CDiagMatrix.o
pic/CMatrix.o pic/CNDArray.o pic/CRowVector.o pic/CmplxAEPBAL.o
pic/CmplxCHOL.o pic/CmplxDET.o pic/CmplxHESS.o pic/CmplxLU.o
pic/CmplxQR.o pic/CmplxQRP.o pic/CmplxSCHUR.o pic/CmplxSVD.o pic/EIG.o
pic/boolMatrix.o pic/boolNDArray.o pic/chMatrix.o pic/chNDArray.o
pic/dColVector.o pic/dDiagMatrix.o pic/dMatrix.o pic/dNDArray.o
pic/dRowVector.o pic/dbleAEPBAL.o pic/dbleCHOL.o pic/dbleDET.o
pic/dbleHESS.o pic/dbleLU.o pic/dbleQR.o pic/dbleQRP.o pic/dbleSCHUR.o
pic/dbleSVD.o pic/boolSparse.o pic/CSparse.o pic/dSparse.o pic/MSparse.o
pic/Sparse.o pic/SparseCmplxLU.o pic/SparsedbleLU.o
pic/SparseCmplxCHOL.o pic/SparsedbleCHOL.o pic/SparseCmplxQR.o
pic/SparseQR.o pic/MatrixType.o pic/int8NDArray.o pic/uint8NDArray.o
pic/int16NDArray.o pic/uint16NDArray.o pic/int32NDArray.o
pic/uint32NDArray.o pic/int64NDArray.o pic/uint64NDArray.o
pic/mx-cdm-dm.o pic/mx-dm-cdm.o pic/mx-cs-cdm.o pic/mx-cs-dm.o
pic/mx-cs-m.o pic/mx-cs-nda.o pic/mx-cdm-cs.o pic/mx-cdm-cm.o
pic/mx-cdm-m.o pic/mx-cdm-s.o pic/mx-cm-cdm.o pic/mx-cm-dm.o
pic/mx-cm-m.o pic/mx-cnda-nda.o pic/mx-cm-s.o pic/mx-cnda-s.o
pic/mx-dm-cs.o pic/mx-dm-cm.o pic/mx-m-cs.o pic/mx-nda-cs.o
pic/mx-m-cdm.o pic/mx-m-cm.o pic/mx-nda-cnda.o pic/mx-s-cdm.o
pic/mx-s-cm.o pic/mx-s-cnda.o pic/mx-dm-m.o pic/mx-dm-s.o pic/mx-m-dm.o
pic/mx-s-dm.o pic/mx-s-i8nda.o pic/mx-i8nda-s.o pic/mx-s-ui8nda.o
pic/mx-ui8nda-s.o pic/mx-s-i16nda.o pic/mx-i16nda-s.o pic/mx-s-ui16nda.o
pic/mx-ui16nda-s.o pic/mx-s-i32nda.o pic/mx-i32nda-s.o
pic/mx-s-ui32nda.o pic/mx-ui32nda-s.o pic/mx-s-i64nda.o
pic/mx-i64nda-s.o pic/mx-s-ui64nda.o pic/mx-ui64nda-s.o pic/mx-nda-i8.o
pic/mx-i8-nda.o pic/mx-nda-ui8.o pic/mx-ui8-nda.o pic/mx-nda-i16.o
pic/mx-i16-nda.o pic/mx-nda-ui16.o pic/mx-ui16-nda.o pic/mx-nda-i32.o
pic/mx-i32-nda.o pic/mx-nda-ui32.o pic/mx-ui32-nda.o pic/mx-nda-i64.o
pic/mx-i64-nda.o pic/mx-nda-ui64.o pic/mx-ui64-nda.o pic/mx-nda-i8nda.o
pic/mx-i8nda-nda.o pic/mx-nda-ui8nda.o pic/mx-ui8nda-nda.o
pic/mx-nda-i16nda.o pic/mx-i16nda-nda.o pic/mx-nda-ui16nda.o
pic/mx-ui16nda-nda.o pic/mx-nda-i32nda.o pic/mx-i32nda-nda.o
pic/mx-nda-ui32nda.o pic/mx-ui32nda-nda.o pic/mx-nda-i64nda.o
pic/mx-i64nda-nda.o pic/mx-nda-ui64nda.o pic/mx-ui64nda-nda.o
pic/mx-i8nda-ui8.o pic/mx-i8nda-i16.o pic/mx-i8nda-ui16.o
pic/mx-i8nda-i32.o pic/mx-i8nda-ui32.o pic/mx-i8nda-i64.o
pic/mx-i8nda-ui64.o pic/mx-i16nda-i8.o pic/mx-i16nda-ui8.o
pic/mx-i16nda-ui16.o pic/mx-i16nda-i32.o pic/mx-i16nda-ui32.o
pic/mx-i16nda-i64.o pic/mx-i16nda-ui64.o pic/mx-i32nda-i8.o
pic/mx-i32nda-ui8.o pic/mx-i32nda-i16.o pic/mx-i32nda-ui16.o
pic/mx-i32nda-ui32.o pic/mx-i32nda-i64.o pic/mx-i32nda-ui64.o
pic/mx-i64nda-i8.o pic/mx-i64nda-ui8.o pic/mx-i64nda-i16.o
pic/mx-i64nda-ui16.o pic/mx-i64nda-i32.o pic/mx-i64nda-ui32.o
pic/mx-i64nda-ui64.o pic/mx-ui8nda-i8.o pic/mx-ui8nda-i16.o
pic/mx-ui8nda-ui16.o pic/mx-ui8nda-i32.o pic/mx-ui8nda-ui32.o
pic/mx-ui8nda-i64.o pic/mx-ui8nda-ui64.o pic/mx-ui16nda-i8.o
pic/mx-ui16nda-ui8.o pic/mx-ui16nda-i16.o pic/mx-ui16nda-i32.o
pic/mx-ui16nda-ui32.o pic/mx-ui16nda-i64.o pic/mx-ui16nda-ui64.o
pic/mx-ui32nda-i8.o pic/mx-ui32nda-ui8.o pic/mx-ui32nda-i16.o
pic/mx-ui32nda-ui16.o pic/mx-ui32nda-i32.o pic/mx-ui32nda-i64.o
pic/mx-ui32nda-ui64.o pic/mx-ui64nda-i8.o pic/mx-ui64nda-ui8.o
pic/mx-ui64nda-i16.o pic/mx-ui64nda-ui16.o pic/mx-ui64nda-i32.o
pic/mx-ui64nda-ui32.o pic/mx-ui64nda-i64.o pic/mx-i8-ui8nda.o
pic/mx-i8-i16nda.o pic/mx-i8-ui16nda.o pic/mx-i8-i32nda.o
pic/mx-i8-ui32nda.o pic/mx-i8-i64nda.o pic/mx-i8-ui64nda.o
pic/mx-i16-i8nda.o pic/mx-i16-ui8nda.o pic/mx-i16-ui16nda.o
pic/mx-i16-i32nda.o pic/mx-i16-ui32nda.o pic/mx-i16-i64nda.o
pic/mx-i16-ui64nda.o pic/mx-i32-i8nda.o pic/mx-i32-ui8nda.o
pic/mx-i32-i16nda.o pic/mx-i32-ui16nda.o pic/mx-i32-ui32nda.o
pic/mx-i32-i64nda.o pic/mx-i32-ui64nda.o pic/mx-i64-i8nda.o
pic/mx-i64-ui8nda.o pic/mx-i64-i16nda.o pic/mx-i64-ui16nda.o
pic/mx-i64-i32nda.o pic/mx-i64-ui32nda.o pic/mx-i64-ui64nda.o
pic/mx-ui8-i8nda.o pic/mx-ui8-i16nda.o pic/mx-ui8-ui16nda.o
pic/mx-ui8-i32nda.o pic/mx-ui8-ui32nda.o pic/mx-ui8-i64nda.o
pic/mx-ui8-ui64nda.o pic/mx-ui16-i8nda.o pic/mx-ui16-ui8nda.o
pic/mx-ui16-i16nda.o pic/mx-ui16-i32nda.o pic/mx-ui16-ui32nda.o
pic/mx-ui16-i64nda.o pic/mx-ui16-ui64nda.o pic/mx-ui32-i8nda.o
pic/mx-ui32-ui8nda.o pic/mx-ui32-i16nda.o pic/mx-ui32-ui16nda.o
pic/mx-ui32-i32nda.o pic/mx-ui32-i64nda.o pic/mx-ui32-ui64nda.o
pic/mx-ui64-i8nda.o pic/mx-ui64-ui8nda.o pic/mx-ui64-i16nda.o
pic/mx-ui64-ui16nda.o pic/mx-ui64-i32nda.o pic/mx-ui64-ui32nda.o
pic/mx-ui64-i64nda.o pic/mx-i8nda-ui8nda.o pic/mx-i8nda-i16nda.o
pic/mx-i8nda-ui16nda.o pic/mx-i8nda-i32nda.o pic/mx-i8nda-ui32nda.o
pic/mx-i8nda-i64nda.o pic/mx-i8nda-ui64nda.o pic/mx-i16nda-i8nda.o
pic/mx-i16nda-ui8nda.o pic/mx-i16nda-ui16nda.o pic/mx-i16nda-i32nda.o
pic/mx-i16nda-ui32nda.o pic/mx-i16nda-i64nda.o pic/mx-i16nda-ui64nda.o
pic/mx-i32nda-i8nda.o pic/mx-i32nda-ui8nda.o pic/mx-i32nda-i16nda.o
pic/mx-i32nda-ui16nda.o pic/mx-i32nda-ui32nda.o pic/mx-i32nda-i64nda.o
pic/mx-i32nda-ui64nda.o pic/mx-i64nda-i8nda.o pic/mx-i64nda-ui8nda.o
pic/mx-i64nda-i16nda.o pic/mx-i64nda-ui16nda.o pic/mx-i64nda-i32nda.o
pic/mx-i64nda-ui32nda.o pic/mx-i64nda-ui64nda.o pic/mx-ui8nda-i8nda.o
pic/mx-ui8nda-i16nda.o pic/mx-ui8nda-ui16nda.o pic/mx-ui8nda-i32nda.o
pic/mx-ui8nda-ui32nda.o pic/mx-ui8nda-i64nda.o pic/mx-ui8nda-ui64nda.o
pic/mx-ui16nda-i8nda.o pic/mx-ui16nda-ui8nda.o pic/mx-ui16nda-i16nda.o
pic/mx-ui16nda-i32nda.o pic/mx-ui16nda-ui32nda.o pic/mx-ui16nda-i64nda.o
pic/mx-ui16nda-ui64nda.o pic/mx-ui32nda-i8nda.o pic/mx-ui32nda-ui8nda.o
pic/mx-ui32nda-i16nda.o pic/mx-ui32nda-ui16nda.o pic/mx-ui32nda-i32nda.o
pic/mx-ui32nda-i64nda.o pic/mx-ui32nda-ui64nda.o pic/mx-ui64nda-i8nda.o
pic/mx-ui64nda-ui8nda.o pic/mx-ui64nda-i16nda.o pic/mx-ui64nda-ui16nda.o
pic/mx-ui64nda-i32nda.o pic/mx-ui64nda-ui32nda.o pic/mx-ui64nda-i64nda.o
pic/vx-ccv-cv.o pic/vx-ccv-s.o pic/vx-crv-rv.o pic/vx-crv-s.o
pic/vx-cs-cv.o pic/vx-cs-rv.o pic/vx-cv-ccv.o pic/vx-cv-cs.o
pic/vx-rv-crv.o pic/vx-rv-cs.o pic/vx-s-ccv.o pic/vx-s-crv.o
pic/smx-sm-cs.o pic/smx-cs-sm.o pic/smx-scm-s.o pic/smx-s-scm.o
pic/smx-scm-sm.o pic/smx-sm-scm.o pic/smx-m-sm.o pic/smx-m-scm.o
pic/smx-cm-sm.o pic/smx-cm-scm.o pic/smx-sm-m.o pic/smx-scm-m.o
pic/smx-sm-cm.o pic/smx-scm-cm.o pic/smx-bm-sbm.o pic/smx-sbm-bm.o
pic/f2c-main.o pic/filemode.o pic/getopt.o pic/getopt1.o pic/lo-cieee.o
pic/lo-cutils.o pic/md5.o pic/mkdir.o pic/oct-getopt.o pic/randgamma.o
pic/randmtzig.o pic/randpoisson.o pic/rename.o pic/rmdir.o
pic/strftime.o pic/strptime.o pic/strcasecmp.o pic/strncase.o
pic/tempname.o pic/tempnam.o pic/cmd-edit.o pic/cmd-hist.o
pic/oct-rl-edit.o pic/oct-rl-hist.o pic/pathsearch.o pic/kpse-xfns.o
-L../libcruft -L. -Wl,-rpath -Wl,/usr/local/lib/octave-3.0.3 -lcruft
-lumfpack -lamd -lcolamd -lccolamd -lblas -lfftw3 -lreadline
-lreadline -lncurses -ldl -lz -lm -L/usr/lib64 -L/opt/AMD/Lib
-L/opt/UMFPACK/Lib -L/opt/SuiteSparse/COLAMD/Lib
-L/opt/SuiteSparse/CCOLAMD/Lib -L/opt/SuiteSparse/CXSparse/Source
-L/opt/5-1.6.8-linux-static/lib -L/opt/metis-4.0
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64
-L/lib/../lib64 -L/usr/lib/../lib64 -lz -lgfortranbegin -lgfortran -lm
/usr/bin/ld: /opt/UMFPACK/Lib/libumfpack.a(umfpack_di_defaults.o):
relocation R_X86_64_32 against `a local symbol' can not be used when
making a shared object; recompile with -fPIC
/opt/UMFPACK/Lib/libumfpack.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [liboctave.so] Error 1
- Octave 3.03 build Problems,
David Laxer <=