Re: [outreach] Help trying to create R package

[Laura Lazzati]

On Thu, Oct 18, 2018 at 10:05 PM Laura Lazzati
<address@hidden> wrote:
>
> On Thu, Oct 18, 2018 at 3:17 PM Laura Lazzati
> <address@hidden> wrote:
> >
> > On Thu, Oct 18, 2018 at 3:15 PM Ricardo Wurmus <address@hidden> wrote:
> > >
> > >
> > > Hi Laura,
> > >
> > > > configure: checking for guile 2.2
> > > > configure: found guile 2.2
> > > > checking for guile-2.2... /usr/bin/guile-2.2
> > > > checking for Guile version >= 2.2... 2.2.3
> > > > checking for guild-2.2... no
> > > > checking for guile-config-2.2... no
> > > > checking for guile-tools-2.2... no
> > > > configure: error: 'guild' binary not found; please check your
> > > > guile-2.x installation.
> > >
> > > I recommend using “guix environment --pure guix” when on a foreign
> > > distribution.
> > Yes, I am trying that right now :) I'll let you know after reading
> > Invoking guix environment and trying that. Hope this works
> > >
> I have tried lots of things today, not successfully.
>
> with guix environment guix, I get the same output that I get without
> using guix environment (I mean, it uses the installed guix that I tend
> to use generally)
> the output of which guix in both cases is:
> /home/laura/.config/guix/current/bin/guix
>
> with guix environment --pure guix --ad-hoc coreutils findutils which (or -C)
> I get, the output:
> Command 'lesspipe' is available in the following places
>  * /bin/lesspipe
>  * /usr/bin/lesspipe
> The command could not be located because '/bin:/usr/bin' is not
> included in the PATH environment variable.
> lesspipe: command not found
> There, I run which guix and get:
> which: no guix in
> (/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/bin:/gnu/store/khk3lpx1li9y5zxzdppn9wi4n5g1qsgs-profile/sbin)
>
> The closest I got was by setting:
> PATH=$PATH:/usr/bin/:/bin
> PATH=$PATH:/usr/local/bin
> And since I still got the issue with guile, I went to
> /usr/bin/
> and created a symlink
> sudo ln -s /gnu/store/p9wm67w3rfw3hlb9iljgvsfn84mz4w9d-guile-2.2.4 guile-2.2.4
> (setting guile-2.2 that whas already there to a hidden file)
>  Then the ./configure --localstatedir=/var
> Worked fine, as well as the make (echo $? of both 0)
> There, the result of which guix is:
> /usr/local/bin/guix
> ( a symlink to -> /var/guix/profiles/per-user/root/guix-profile/bin/guix)
> I could run the ./pre-inst-env guix package -i hello, took a while but worked.
> Complained about having to do:
> export PATH="/home/laura/.guix-profile/bin${PATH:+:}$PATH"
> Did so.
> And finally I appended my r-aspi definition to cran.scm
> However, everything went wrong when trying to run: (sorry, the output
> is long and I also get the same output with ./pre-inst-env lint
> r-aspi)
> ./pre-inst-env guix build r-aspi
> ;;; note: source file /home/laura/guix/gnu/packages/cran.scm
> ;;;       newer than compiled /home/laura/guix/gnu/packages/cran.go
> guix build: warning: failed to load '(gnu packages abiword)':
> exception thrown: #<condition &invalid-base32-character [character:
> #\t string: "a7izhueiqsdjs2eo7dfyb63cqje7mbqz6ennlyoynxxucbhpdnta"]
I have an update here, sorry, I can't help trying to figure out what's
wrong. In the definition of my r-aspi, I found that the base32 was not
well calculated, and I have already corrected that. Now this line does
not appear anymore when throwing the same commands. the other warnings
do. and the In procedure module-lookup: Unbound variable: continue
too.  I also tried generating the new cran.go with guild compile
cran.scm but the output was really awful. If you need it, when you
answer back I paste it.
> 262f6c0>
> guix build: warning: failed to load '(gnu packages android)':
> In procedure module-lookup: Unbound variable: googletest
> guix build: warning: failed to load '(gnu packages avr)':
> In procedure module-lookup: Unbound variable: binutils
> guix build: warning: failed to load '(gnu packages axoloti)':
> In procedure module-lookup: Unbound variable: gcc-4.9
> guix build: warning: failed to load '(gnu packages bioconductor)':
> In procedure module-lookup: Unbound variable: perl-module-build
> guix build: warning: failed to load '(gnu packages bootloaders)':
> no binding `bc' in module (gnu packages algebra)
> guix build: warning: failed to load '(gnu packages chemistry)':
> In procedure module-lookup: Unbound variable: python2-numpy
> guix build: warning: failed to load '(gnu packages commencement)':
> In procedure module-lookup: Unbound variable: gnu-make
> guix build: warning: failed to load '(gnu packages debug)':
> In procedure module-lookup: Unbound variable: gnu-make
> guix build: warning: failed to load '(gnu packages display-managers)':
> In procedure module-lookup: Unbound variable: gpgme
> guix build: warning: failed to load '(gnu packages games)':
> In procedure module-lookup: Unbound variable: unzip
> guix build: warning: failed to load '(gnu packages image-viewers)':
> In procedure module-lookup: Unbound variable: curl
> guix build: warning: failed to load '(gnu packages license)':
> In procedure module-lookup: Unbound variable: perl
> guix build: warning: failed to load '(gnu packages make-bootstrap)':
> In procedure module-lookup: Unbound variable: coreutils
> guix build: warning: failed to load '(gnu packages maven)':
> In procedure module-lookup: Unbound variable: java-plexus-container-default
> guix build: warning: failed to load '(gnu packages syndication)':
> In procedure module-lookup: Unbound variable: curl
> guix build: warning: failed to load '(gnu packages unrtf)':
> In procedure module-lookup: Unbound variable: coreutils
> guix build: error: r-aspi: unknown package
>
>
>
>
> > >
> > > Ricardo
> > >
> Regards,
> Laura
Regards,
Laura