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Re: [PATCH] Add vcflib.
From: |
Ricardo Wurmus |
Subject: |
Re: [PATCH] Add vcflib. |
Date: |
Wed, 20 Apr 2016 14:53:04 +0200 |
Roel Janssen <address@hidden> writes:
> From edcf3132dca6c3e86439710892870285377adbb2 Mon Sep 17 00:00:00 2001
> From: Roel Janssen <address@hidden>
> Date: Tue, 22 Mar 2016 15:07:47 +0100
> Subject: [PATCH 3/8] gnu: Add multichoose.
> * gnu/packages/bioinformatics.scm (multichoose): New variable.
> ---
> gnu/packages/bioinformatics.scm | 35 +++++++++++++++++++++++++++++++++++
> 1 file changed, 35 insertions(+)
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index fa7ba24..9465d56 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -4861,3 +4861,38 @@ algorithm.")
> ;; this program is a submodule, is licensed MIT, which is the same as
> ;; the Expat license.
> (license (list license:gpl2 license:expat)))))
> +
> +(define-public multichoose
> + (package
> + (name "multichoose")
> + (version "1.0.3")
> + (source (origin
> + (method url-fetch)
> + (uri (string-append "https://github.com/ekg/multichoose/archive/v"
> + version ".tar.gz"))
> + (file-name (string-append name "-" version ".tar.gz"))
> + (sha256
> + (base32 "0xy86vvr3qrs4l81qis7ia1q2hnqv0xcb4a1n60smxbhqqis5w3l"))))
> + (build-system gnu-build-system)
> + (native-inputs
> + `(("python" ,python-2)
> + ("node" ,node)))
> + (arguments
> + `(#:tests? #f ; There are no tests to run.
> + #:phases
> + (modify-phases %standard-phases
> + (delete 'configure) ; There is no configure phase.
> + (replace 'install
> + (lambda* (#:key outputs #:allow-other-keys)
> + (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
> + (install-file "multichoose" bin)
> + (install-file "multipermute" bin)))))))
Nitpick: normally, we place the arguments right below the
“build-system”. The “native-inputs” then follow after “arguments”.
> + (home-page "https://github.com/ekg/multichoose")
> + (synopsis "Library for efficient loopless multiset combination generation
> +algorithm")
This synopsis is a bit long. Maybe drop “efficient”? (Most projects
include “efficient” or “fast” in their descriptions, so it isn’t very
useful in a synopsis.)
> + (description "A library implements an efficient loopless multiset
> +combination generation algorithm which is (approximately) described in
> +\"Loopless algorithms for generating permutations, combinations, and other
> +combinatorial configurations.\" G Ehrlich - Journal of the ACM (JACM),
> +1973. (Algorithm 7.)")
“A library”? How about “This package provides a library implementing...”
> + (license license:expat)))
~~ Ricardo
Re: [PATCH] Add vcflib., Ricardo Wurmus, 2016/04/20
Re: [PATCH] Add vcflib., Ricardo Wurmus, 2016/04/20
Re: [PATCH] Add vcflib., Ricardo Wurmus, 2016/04/20