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13/16: gnu: Add r-dss.
From: |
guix-commits |
Subject: |
13/16: gnu: Add r-dss. |
Date: |
Thu, 30 Mar 2023 08:28:06 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a969d91ca5147e6f27224e2539352724ae685ad5
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Mar 30 14:15:59 2023 +0200
gnu: Add r-dss.
* gnu/packages/bioconductor.scm (r-dss): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a91ee8fe06..46a93f88af 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4727,6 +4727,32 @@ makes available functions for visualization and
exploration of the data and
results.")
(license license:gpl3+)))
+(define-public r-dss
+ (package
+ (name "r-dss")
+ (version "2.46.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DSS" version))
+ (sha256
+ (base32
+ "1qm0pq6495fn2zrbddaadb1w01ry76rg8mmbmxf3zws9pww48jgf"))))
+ (properties `((upstream-name . "DSS")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-biocparallel r-bsseq))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/DSS")
+ (synopsis "Dispersion shrinkage for sequencing data")
+ (description
+ "DSS is an R library performing differential analysis for count-based
+sequencing data. It detects @dfn{differentially expressed genes} (DEGs) from
+RNA-seq, and differentially methylated loci or regions (DML/DMRs) from
+@dfn{bisulfite sequencing} (BS-seq). The core of DSS is a dispersion
+shrinkage method for estimating the dispersion parameter from Gamma-Poisson or
+Beta-Binomial distributions.")
+ ;; Any version of the GPL
+ (license (list license:gpl2+ license:gpl3+))))
+
(define-public r-bluster
(package
(name "r-bluster")
- 05/16: gnu: Add r-kpmt., (continued)
- 05/16: gnu: Add r-kpmt., guix-commits, 2023/03/30
- 15/16: gnu: Add r-rpmm., guix-commits, 2023/03/30
- 02/16: gnu: Add r-minfidata., guix-commits, 2023/03/30
- 03/16: gnu: Add r-jade., guix-commits, 2023/03/30
- 04/16: gnu: Add r-isva., guix-commits, 2023/03/30
- 06/16: gnu: Add r-globaltest., guix-commits, 2023/03/30
- 08/16: gnu: Add r-champdata., guix-commits, 2023/03/30
- 09/16: gnu: Add r-ruv., guix-commits, 2023/03/30
- 10/16: gnu: Add r-illumina450probevariants-db., guix-commits, 2023/03/30
- 01/16: gnu: Add r-illuminahumanmethylation450kmanifest., guix-commits, 2023/03/30
- 13/16: gnu: Add r-dss.,
guix-commits <=
- 14/16: gnu: Add r-dmrcate., guix-commits, 2023/03/30
- 16/16: gnu: Add r-champ., guix-commits, 2023/03/30
- 12/16: gnu: Add r-missmethyl., guix-commits, 2023/03/30
- 11/16: gnu: Add r-illuminahumanmethylationepicanno-ilm10b4-hg19., guix-commits, 2023/03/30