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08/16: gnu: Add r-champdata.
From: |
guix-commits |
Subject: |
08/16: gnu: Add r-champdata. |
Date: |
Thu, 30 Mar 2023 08:28:05 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit fcc8b808e78ce66b9f2b55dfd432dcb97fdb3933
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Mar 30 13:55:40 2023 +0200
gnu: Add r-champdata.
* gnu/packages/bioconductor.scm (r-champdata): New variable.
---
gnu/packages/bioconductor.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7690382dc7..3d2a1dba74 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1414,6 +1414,26 @@ curated cell type labels, for use in procedures like
automated annotation of
single-cell data or deconvolution of bulk RNA-seq.")
(license license:gpl3)))
+(define-public r-champdata
+ (package
+ (name "r-champdata")
+ (version "2.30.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ChAMPdata" version 'experiment))
+ (sha256
+ (base32
+ "0rz762szfl02h4d3dj7ckd41ji9mdsja8nxqw6fl086z337041zw"))))
+ (properties `((upstream-name . "ChAMPdata")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocgenerics r-genomicranges))
+ (home-page "https://bioconductor.org/packages/ChAMPdata")
+ (synopsis "Data packages for ChAMP package")
+ (description
+ "This package provides datasets needed for ChAMP including a test dataset
+and blood controls for CNA analysis.")
+ (license license:gpl3)))
+
(define-public r-chromstardata
(package
(name "r-chromstardata")
- branch master updated (3f1617da19 -> 96e81b18b9), guix-commits, 2023/03/30
- 07/16: gnu: Add r-prettydoc., guix-commits, 2023/03/30
- 05/16: gnu: Add r-kpmt., guix-commits, 2023/03/30
- 15/16: gnu: Add r-rpmm., guix-commits, 2023/03/30
- 02/16: gnu: Add r-minfidata., guix-commits, 2023/03/30
- 03/16: gnu: Add r-jade., guix-commits, 2023/03/30
- 04/16: gnu: Add r-isva., guix-commits, 2023/03/30
- 06/16: gnu: Add r-globaltest., guix-commits, 2023/03/30
- 08/16: gnu: Add r-champdata.,
guix-commits <=
- 09/16: gnu: Add r-ruv., guix-commits, 2023/03/30
- 10/16: gnu: Add r-illumina450probevariants-db., guix-commits, 2023/03/30
- 01/16: gnu: Add r-illuminahumanmethylation450kmanifest., guix-commits, 2023/03/30
- 13/16: gnu: Add r-dss., guix-commits, 2023/03/30
- 14/16: gnu: Add r-dmrcate., guix-commits, 2023/03/30
- 16/16: gnu: Add r-champ., guix-commits, 2023/03/30
- 12/16: gnu: Add r-missmethyl., guix-commits, 2023/03/30
- 11/16: gnu: Add r-illuminahumanmethylationepicanno-ilm10b4-hg19., guix-commits, 2023/03/30