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09/09: gnu: Add r-seurat-utils.
From: |
guix-commits |
Subject: |
09/09: gnu: Add r-seurat-utils. |
Date: |
Fri, 3 Mar 2023 09:13:07 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c6480edbe3260a3bfb48361ca73e666b6d473f42
Author: Navid Afkhami <navid.afkhami@mdc-berlin.de>
AuthorDate: Fri Mar 3 13:07:23 2023 +0000
gnu: Add r-seurat-utils.
* gnu/packages/bioinformatics.scm (r-seurat-utils): New variable.
---
gnu/packages/bioinformatics.scm | 54 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 54 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cb6f6c5af1..85b81b2c81 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15939,6 +15939,60 @@ information... The package can also be used to
extract data from @code{.loom}
files.")
(license license:expat))))
+(define-public r-seurat-utils
+ (let ((commit "0b6f5b548a49148cfbeaa654e8a618c0a020afa5")
+ (revision "1"))
+ (package
+ (name "r-seurat-utils")
+ (version (git-version "1.6.5" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/vertesy/Seurat.utils")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1mn64h375mkj6x4ix5493z32gqg96yc507j5jr0lx9g5wk1bf762"))))
+ (properties `((upstream-name . "Seurat.utils")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-codeandroll2
+ r-cowplot
+ r-dplyr
+ r-ggcorrplot
+ r-ggexpress
+ r-ggplot2
+ r-ggpubr
+ r-ggrepel
+ r-hgnchelper
+ r-htmlwidgets
+ r-markdownhelpers
+ r-markdownreports
+ r-matrix
+ r-matrixstats
+ r-princurve
+ r-r-utils
+ r-readr
+ r-readwriter
+ r-reshape2
+ r-scales
+ r-seurat
+ r-soupx
+ r-sparsematrixstats
+ r-stringendo
+ r-stringr
+ r-tibble
+ r-tictoc
+ r-vroom))
+ (home-page "https://github.com/vertesy/Seurat.utils")
+ (synopsis "Collection of utility functions for Seurat")
+ (description
+ "This is a collection of utility functions for Seurat. These functions
+allow the automation and multiplexing of plotting, 3D plotting, visualization
+of statistics & QC, interaction with the Seurat object. Some functionalities
+require functions from CodeAndRoll and MarkdownReports libraries.")
+ (license license:gpl3))))
+
(define-public r-seuratwrappers
;; There are no releases or tags.
(let ((commit "d28512f804d5fe05e6d68900ca9221020d52cf1d")
- branch master updated (6385070190 -> c6480edbe3), guix-commits, 2023/03/03
- 01/09: gnu: Add r-stringendo., guix-commits, 2023/03/03
- 02/09: gnu: Add r-readwriter., guix-commits, 2023/03/03
- 07/09: gnu: Add r-tictoc., guix-commits, 2023/03/03
- 03/09: gnu: Add r-codeandroll2., guix-commits, 2023/03/03
- 08/09: gnu: Add r-hgnchelper., guix-commits, 2023/03/03
- 06/09: gnu: Add r-ggexpress., guix-commits, 2023/03/03
- 09/09: gnu: Add r-seurat-utils.,
guix-commits <=
- 04/09: gnu: Add r-markdownhelpers., guix-commits, 2023/03/03
- 05/09: gnu: Add r-markdownreports., guix-commits, 2023/03/03