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03/08: gnu: Add r-sccore.
From: |
guix-commits |
Subject: |
03/08: gnu: Add r-sccore. |
Date: |
Wed, 1 Mar 2023 07:47:15 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 7018092b0ea588ad04d0ae549c256dd9a480866b
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Mon Feb 27 11:28:41 2023 +0100
gnu: Add r-sccore.
* gnu/packages/cran.scm (r-sccore): New variable.
---
gnu/packages/cran.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e04b3e320f..ceb84ba823 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22440,6 +22440,49 @@ errors and possible semantic issues. It supports on
the fly checking of R
code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
(license license:expat)))
+(define-public r-sccore
+ (package
+ (name "r-sccore")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "sccore" version))
+ (sha256
+ (base32 "12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r"))))
+ (properties `((upstream-name . "sccore")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-dplyr
+ r-ggplot2
+ r-ggrepel
+ r-igraph
+ r-irlba
+ r-magrittr
+ r-matrix
+ r-pbmcapply
+ r-proc
+ r-rcpp
+ r-rcpparmadillo
+ r-rcppeigen
+ r-rcppprogress
+ r-rlang
+ r-scales
+ r-tibble
+ r-uwot
+ r-withr))
+ (home-page "https://github.com/kharchenkolab/sccore")
+ (synopsis "Core utilities for single-cell RNA-Seq")
+ (description
+ "This package implements core utilities for single-cell RNA-seq data
analysis.
+Contained within are utility functions for working with @acronym{DE,
+differential expression} matrices and count matrices, a collection of
+functions for manipulating and plotting data via ggplot2, and functions to
+work with cell graphs and cell embeddings. Graph-based methods include
+embedding kNN cell graphs into a UMAP, collapsing vertices of each cluster in
+the graph, and propagating graph labels.")
+ (license license:gpl3)))
+
(define-public r-scs
(package
(name "r-scs")
- branch master updated (2eb750ab1f -> 1fb43d1d19), guix-commits, 2023/03/01
- 02/08: gnu: Add r-n2r., guix-commits, 2023/03/01
- 06/08: gnu: Add r-dendsort., guix-commits, 2023/03/01
- 01/08: gnu: Add r-rcppspdlog., guix-commits, 2023/03/01
- 05/08: gnu: Add r-drat., guix-commits, 2023/03/01
- 07/08: gnu: Add r-pagoda2., guix-commits, 2023/03/01
- 03/08: gnu: Add r-sccore.,
guix-commits <=
- 04/08: gnu: Add r-leidenalg., guix-commits, 2023/03/01
- 08/08: gnu: Add r-conos., guix-commits, 2023/03/01