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01/09: gnu: Add pbcopper.
From: |
guix-commits |
Subject: |
01/09: gnu: Add pbcopper. |
Date: |
Tue, 7 Dec 2021 17:52:12 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit 4195a877cb2e1660b70ed73990f3dc371324b988
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Dec 7 16:00:22 2021 +0100
gnu: Add pbcopper.
* gnu/packages/bioinformatics.scm (pbcopper): New variable.
---
gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 35c28b8..8ca3d12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -569,6 +569,42 @@ BED, GFF/GTF, VCF.")
`(("samtools" ,samtools)
("zlib" ,zlib)))))
+(define-public pbcopper
+ ;; This is the latest commit at the time of this writing.
+ (let ((commit "ad4143afd25a0bd6adc977c544865c992a515841")
+ (revision "1"))
+ (package
+ (name "pbcopper")
+ (version (git-version "1.9.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/PacificBiosciences/pbcopper")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1qxkbpdkamfisnk36lpi1vdvf3p1lg2hdqna3xgd94pz52bwbmp7"))))
+ (build-system meson-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-meson-files
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "meson.build"
+ (("-msse4.1") "")))))))
+ (inputs
+ `(("boost" ,boost)))
+ (native-inputs
+ `(("googletest" ,googletest)
+ ("pkg-config" ,pkg-config)))
+ (home-page "https://github.com/PacificBiosciences/pbcopper")
+ (synopsis "Data structures, algorithms, and utilities for PacBio C++
applications")
+ (description
+ "The pbcopper library provides a suite of data structures, algorithms,
+and utilities for PacBio C++ applications.")
+ (license license:bsd-3))))
+
(define-public pbbam
(package
(name "pbbam")
- branch core-updates-frozen updated (8dcf062 -> 5fb1ba8), guix-commits, 2021/12/07
- 01/09: gnu: Add pbcopper.,
guix-commits <=
- 03/09: gnu: pbbam: Update to 1.7.0., guix-commits, 2021/12/07
- 08/09: gnu: blasr: Update to 5.3.5., guix-commits, 2021/12/07
- 02/09: gnu: bwa-pssm: Fix build., guix-commits, 2021/12/07
- 04/09: gnu: clipper: Update to 2.0.1., guix-commits, 2021/12/07
- 05/09: gnu: htseq: Update to 0.12.3., guix-commits, 2021/12/07
- 06/09: gnu: blasr-libcpp: Update to 5.3.5., guix-commits, 2021/12/07
- 07/09: gnu: blasr: Remove trailing #T., guix-commits, 2021/12/07
- 09/09: gnu: newick-utils: Pass -fcommon to compiler., guix-commits, 2021/12/07