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11/21: gnu: Add r-icobra.
From: |
guix-commits |
Subject: |
11/21: gnu: Add r-icobra. |
Date: |
Wed, 13 Mar 2019 08:18:12 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 251e08301a514fa035feb17fbb0173f9a0914015
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 13 12:51:48 2019 +0100
gnu: Add r-icobra.
* gnu/packages/bioconductor.scm (r-icobra): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0e26033..adc0e84 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1898,3 +1898,37 @@ any continuous-valued or categorical variable that is
thought to be
informative on the statistical properties of each hypothesis test, while it is
independent of the p-value under the null hypothesis.")
(license license:artistic2.0)))
+
+(define-public r-icobra
+ (package
+ (name "r-icobra")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "iCOBRA" version))
+ (sha256
+ (base32
+ "0i1swrm31g0zffi5pm48bfvdfqpd32d0zdchkbyipz96al46jnld"))))
+ (properties `((upstream-name . "iCOBRA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-dplyr" ,r-dplyr)
+ ("r-dt" ,r-dt)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-limma" ,r-limma)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rocr" ,r-rocr)
+ ("r-scales" ,r-scales)
+ ("r-shiny" ,r-shiny)
+ ("r-shinybs" ,r-shinybs)
+ ("r-shinydashboard" ,r-shinydashboard)
+ ("r-upsetr" ,r-upsetr)))
+ (home-page "https://bioconductor.org/packages/iCOBRA")
+ (synopsis "Comparison and visualization of ranking and assignment methods")
+ (description
+ "This package provides functions for calculation and visualization of
+performance metrics for evaluation of ranking and binary
+classification (assignment) methods. It also contains a Shiny application for
+interactive exploration of results.")
+ (license license:gpl2+)))
- branch master updated (2b6ab17 -> 0fbaf19), guix-commits, 2019/03/13
- 06/21: gnu: Add r-shinyjs., guix-commits, 2019/03/13
- 01/21: gnu: Add r-nbpseq., guix-commits, 2019/03/13
- 02/21: gnu: Add r-ebseq., guix-commits, 2019/03/13
- 11/21: gnu: Add r-icobra.,
guix-commits <=
- 12/21: gnu: Add r-mast., guix-commits, 2019/03/13
- 05/21: gnu: Add r-shinybs., guix-commits, 2019/03/13
- 20/21: gnu: Add r-bumphunter., guix-commits, 2019/03/13
- 09/21: gnu: Add r-nor1mix., guix-commits, 2019/03/13
- 07/21: gnu: Add r-colourpicker., guix-commits, 2019/03/13
- 04/21: gnu: Add r-ihw., guix-commits, 2019/03/13
- 08/21: gnu: Add r-ggextra., guix-commits, 2019/03/13
- 10/21: gnu: Add r-beanplot., guix-commits, 2019/03/13
- 15/21: gnu: Add r-scdd., guix-commits, 2019/03/13
- 16/21: gnu: Add r-scone., guix-commits, 2019/03/13