I am studying the self-assembly of amphiphilic polymers. I use the "analyze aggregation" command to find the aggregates.
Although I see in VMD that there are several free polymers and two micelles in the system, the command gives all molecules in one aggregate. I have checked different values for dist_criteria.
The code is attached to this email. I would be grateful if someone could kindly help me in this issue.
amphiphiles.tcl