bug#62882: closed ([PATCH] gnu: Add r-demultiplex2.)

[GNU bug Tracking System]

Your message dated Mon, 17 Apr 2023 11:20:11 +0200
with message-id <87a5z6sw4h.fsf@elephly.net>
and subject line gnu: Add r-demultiplex2.
has caused the debbugs.gnu.org bug report #62882,
regarding [PATCH] gnu: Add r-demultiplex2.
to be marked as done.

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-- 
62882: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=62882
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-demultiplex2.
>
>
>
>
> Date: 
>
> Sun, 16 Apr 2023 12:28:12 +0200
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-demultiplex2): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++
>  1 file changed, 41 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index b5442dd0ad..1919866731 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -9662,6 +9662,47 @@ (define-public r-demuxmix
>  rates can be estimated, and methods for quality control are provided.")
>        (license license:artistic2.0))))
>  
> +(define-public r-demultiplex2
> +  (let ((commit "e42bc8310c0ea035af100e6ccea59b46ad6385f5")
> +        (revision "1"))
> +    (package
> +      (name "r-demultiplex2")
> +      (version (git-version "1.0.0" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/Gartner-Lab/deMULTIplex2";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "15f3kshsdvm97w24ql9b1wjlfbabimdsam0482hg7jivlvpl8j9w"))))
> +      (properties `((upstream-name . "deMULTIplex2")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-data-table
> +                               r-devtools
> +                               r-dplyr
> +                               r-ggextra
> +                               r-ggplot2
> +                               r-gridextra
> +                               r-magrittr
> +                               r-mass
> +                               r-matrix
> +                               r-rcolorbrewer
> +                               r-shortread
> +                               r-stringdist
> +                               r-tidyr
> +                               r-uwot
> +                               r-viridis
> +                               r-xvector))
> +      (home-page "https://github.com/Gartner-Lab/deMULTIplex2";)
> +      (synopsis "Robust sample demultiplexing for scRNA-seq")
> +      (description
> +       "Bioinformatics algorithm for demultiplexing multiplexed single cell 
> datasets.
> +It is built on a statistical model of tag read counts derived from
> +the physical mechanism of tag cross-contamination.")
> +      (license license:cc0))))
> +
>  (define-public r-demultiplex
>    (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
>          (revision "1"))
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> gnu: Add r-demultiplex2.
>
>
>
>
> Date: 
>
> Mon, 17 Apr 2023 11:20:11 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.10.2; emacs 28.2
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---