bug#62881: closed ([PATCH] gnu: Add r-demuxmix.)

[GNU bug Tracking System]

Your message dated Mon, 17 Apr 2023 11:19:34 +0200
with message-id <87edoisw5d.fsf@elephly.net>
and subject line gnu: Add r-demuxmix.
has caused the debbugs.gnu.org bug report #62881,
regarding [PATCH] gnu: Add r-demuxmix.
to be marked as done.

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-- 
62881: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=62881
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-demuxmix.
>
>
>
>
> Date: 
>
> Sun, 16 Apr 2023 12:09:48 +0200
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-demuxmix): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
>  1 file changed, 30 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 99cc056f9f..b5442dd0ad 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -9632,6 +9632,36 @@ (define-public r-centipede
>  information as possible.")
>      (license (list license:gpl2+ license:gpl3+))))
>  
> +(define-public r-demuxmix
> +  (let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
> +        (revision "1"))
> +    (package
> +      (name "r-demuxmix")
> +      (version (git-version "1.1.1" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/huklein/demuxmix";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
> +      (properties `((upstream-name . "demuxmix")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/huklein/demuxmix";)
> +      (synopsis
> +       "Demultiplexing oligo-barcoded scRNA-seq data using regression mixture 
> models")
> +      (description
> +       "This package is used for demultiplexing single-cell sequencing 
> experiments of pooled cells.
> +These cells are labeled with barcode oligonucleotides.  The package
> +implements methods to fit regression mixture models for a probabilistic
> +classification of cells, including multiplet detection.  Demultiplexing error
> +rates can be estimated, and methods for quality control are provided.")
> +      (license license:artistic2.0))))
> +
>  (define-public r-demultiplex
>    (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
>          (revision "1"))
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> gnu: Add r-demuxmix.
>
>
>
>
> Date: 
>
> Mon, 17 Apr 2023 11:19:34 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.10.2; emacs 28.2
>
>
>
>
> Applied, thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---