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06/14: gnu: seqtk: Update to 1.3.
From: |
Ricardo Wurmus |
Subject: |
06/14: gnu: seqtk: Update to 1.3. |
Date: |
Wed, 7 Nov 2018 17:17:48 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 63f3255e13be8d1352031c78a37131c2c6644bdb
Author: Ricardo Wurmus <address@hidden>
Date: Wed Nov 7 22:34:41 2018 +0100
gnu: seqtk: Update to 1.3.
* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3.
[source]: Remove outdated snippet.
[arguments]: Use INVOKE and return #T unconditionally.
---
gnu/packages/bioinformatics.scm | 17 +++++------------
1 file changed, 5 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b98be8e..670bea5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5868,7 +5868,7 @@ is one that takes arguments.")
(define-public seqtk
(package
(name "seqtk")
- (version "1.2")
+ (version "1.3")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -5877,15 +5877,7 @@ is one that takes arguments.")
(file-name (git-file-name name version))
(sha256
(base32
- "1mdkgmzdy734a0na9hxbl4k41jjkm87bvjbm7bdbh50fsra86f93"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Remove extraneous header files, as is done in the seqtk
- ;; master branch.
- (for-each (lambda (file) (delete-file file))
- (list "ksort.h" "kstring.h" "kvec.h"))
- #t))))
+ "1bfzlqa84b5s1qi22blmmw2s8xdyp9h9ydcq22pfjhh5gab3yz6l"))))
(build-system gnu-build-system)
(arguments
`(#:phases
@@ -5893,11 +5885,12 @@ is one that takes arguments.")
(delete 'configure)
(replace 'check
;; There are no tests, so we just run a sanity check.
- (lambda _ (zero? (system* "./seqtk" "seq"))))
+ (lambda _ (invoke "./seqtk" "seq") #t))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
- (install-file "seqtk" bin)))))))
+ (install-file "seqtk" bin)
+ #t))))))
(inputs
`(("zlib" ,zlib)))
(home-page "https://github.com/lh3/seqtk")
- branch master updated (b44b1f0 -> f3f34b1), Ricardo Wurmus, 2018/11/07
- 04/14: gnu: raxml: Update to 8.2.12., Ricardo Wurmus, 2018/11/07
- 01/14: gnu: pyicoteo: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 03/14: gnu: python2-biom-format: Fix build., Ricardo Wurmus, 2018/11/07
- 06/14: gnu: seqtk: Update to 1.3.,
Ricardo Wurmus <=
- 14/14: gnu: filevercmp: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 07/14: gnu: preseq: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 13/14: gnu: ritornello: Update to 2.0.1., Ricardo Wurmus, 2018/11/07
- 05/14: gnu: seqtk: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 08/14: gnu: preseq: Update to 2.0.3., Ricardo Wurmus, 2018/11/07
- 10/14: gnu: sortmerna: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 09/14: gnu: vsearch: Fetch source from git., Ricardo Wurmus, 2018/11/07
- 02/14: gnu: raxml: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 11/14: gnu: snap-aligner: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 12/14: gnu: ritornello: Fetch sources from git., Ricardo Wurmus, 2018/11/07