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33/36: gnu: Add BSgenome.
From: |
Ricardo Wurmus |
Subject: |
33/36: gnu: Add BSgenome. |
Date: |
Thu, 07 Jan 2016 16:19:16 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit c63cef669991940108448d23c8b427898cf83547
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 23 17:34:07 2015 +0100
gnu: Add BSgenome.
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 files changed, 30 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 31326f2..8c2351d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3836,6 +3836,36 @@ dependencies between GO terms can be implemented and
applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
+(define-public r-bsgenome
+ (package
+ (name "r-bsgenome")
+ (version "1.38.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BSgenome" version))
+ (sha256
+ (base32
+ "130w0m6q8kkca7gyz1aqj5jjhalwvwi6rk2yvbjrnj4gpnncyrd2"))))
+ (properties
+ `((upstream-name . "BSgenome")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)))
+ (home-page "http://bioconductor.org/packages/BSgenome")
+ (synopsis "Infrastructure for Biostrings-based genome data packages")
+ (description
+ "This package provides infrastructure shared by all Biostrings-based
+genome data packages and support for efficient SNP representation.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")
- 11/36: gnu: Add AnnotationDbi., (continued)
- 11/36: gnu: Add AnnotationDbi., Ricardo Wurmus, 2016/01/07
- 06/36: gnu: Add lambda.r., Ricardo Wurmus, 2016/01/07
- 20/36: gnu: Add GO.db., Ricardo Wurmus, 2016/01/07
- 16/36: gnu: Add SummarizedExperiment., Ricardo Wurmus, 2016/01/07
- 27/36: gnu: Add R.cache., Ricardo Wurmus, 2016/01/07
- 28/36: gnu: Add R.rsp., Ricardo Wurmus, 2016/01/07
- 23/36: gnu: Add base64enc., Ricardo Wurmus, 2016/01/07
- 26/36: gnu: Add R.utils., Ricardo Wurmus, 2016/01/07
- 05/36: gnu: Add r-xml., Ricardo Wurmus, 2016/01/07
- 10/36: gnu: Add Biobase., Ricardo Wurmus, 2016/01/07
- 33/36: gnu: Add BSgenome.,
Ricardo Wurmus <=
- 19/36: gnu: Add GenomicFeatures., Ricardo Wurmus, 2016/01/07
- 22/36: gnu: Add DT., Ricardo Wurmus, 2016/01/07
- 30/36: gnu: Add topGO., Ricardo Wurmus, 2016/01/07
- 25/36: gnu: Add R.oo., Ricardo Wurmus, 2016/01/07
- 34/36: gnu: Add impute., Ricardo Wurmus, 2016/01/07
- 31/36: gnu: Add viridis., Ricardo Wurmus, 2016/01/07
- 32/36: gnu: Add plotly., Ricardo Wurmus, 2016/01/07
- 36/36: gnu: Add genomation., Ricardo Wurmus, 2016/01/07
- 24/36: gnu: Add R.methodsS3., Ricardo Wurmus, 2016/01/07
- 29/36: gnu: Add matrixStats., Ricardo Wurmus, 2016/01/07