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30/36: gnu: Add topGO.
From: |
Ricardo Wurmus |
Subject: |
30/36: gnu: Add topGO. |
Date: |
Thu, 07 Jan 2016 16:19:15 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit d547ce5e70b0bbd1ea33471c7d0029f5ae3e49f5
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 23 17:31:03 2015 +0100
gnu: Add topGO.
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 files changed, 29 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f2a15b4..31326f2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3807,6 +3807,35 @@ extracting the desired features in a convenient format.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
+(define-public r-topgo
+ (package
+ (name "r-topgo")
+ (version "2.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "topGO" version))
+ (sha256
+ (base32
+ "029j9nb39b8l9xlzsp83pmjr8ap247aia387yzaa1yyw8klapdaf"))))
+ (properties
+ `((upstream-name . "topGO")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-go-db" ,r-go-db)
+ ("r-sparsem" ,r-sparsem)))
+ (home-page "http://bioconductor.org/packages/topGO")
+ (synopsis "Enrichment analysis for gene ontology")
+ (description
+ "The topGO package provides tools for testing @dfn{gene ontology} (GO)
+terms while accounting for the topology of the GO graph. Different test
+statistics and different methods for eliminating local similarities and
+dependencies between GO terms can be implemented and applied.")
+ ;; Any version of the LGPL applies.
+ (license license:lgpl2.1+)))
+
(define-public r-qtl
(package
(name "r-qtl")
- 16/36: gnu: Add SummarizedExperiment., (continued)
- 16/36: gnu: Add SummarizedExperiment., Ricardo Wurmus, 2016/01/07
- 27/36: gnu: Add R.cache., Ricardo Wurmus, 2016/01/07
- 28/36: gnu: Add R.rsp., Ricardo Wurmus, 2016/01/07
- 23/36: gnu: Add base64enc., Ricardo Wurmus, 2016/01/07
- 26/36: gnu: Add R.utils., Ricardo Wurmus, 2016/01/07
- 05/36: gnu: Add r-xml., Ricardo Wurmus, 2016/01/07
- 10/36: gnu: Add Biobase., Ricardo Wurmus, 2016/01/07
- 33/36: gnu: Add BSgenome., Ricardo Wurmus, 2016/01/07
- 19/36: gnu: Add GenomicFeatures., Ricardo Wurmus, 2016/01/07
- 22/36: gnu: Add DT., Ricardo Wurmus, 2016/01/07
- 30/36: gnu: Add topGO.,
Ricardo Wurmus <=
- 25/36: gnu: Add R.oo., Ricardo Wurmus, 2016/01/07
- 34/36: gnu: Add impute., Ricardo Wurmus, 2016/01/07
- 31/36: gnu: Add viridis., Ricardo Wurmus, 2016/01/07
- 32/36: gnu: Add plotly., Ricardo Wurmus, 2016/01/07
- 36/36: gnu: Add genomation., Ricardo Wurmus, 2016/01/07
- 24/36: gnu: Add R.methodsS3., Ricardo Wurmus, 2016/01/07
- 29/36: gnu: Add matrixStats., Ricardo Wurmus, 2016/01/07
- 35/36: gnu: Add seqPattern., Ricardo Wurmus, 2016/01/07