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Loading HDF5 / h5 files


From: Matthias Brennwald
Subject: Loading HDF5 / h5 files
Date: Wed, 4 Jun 2014 13:36:15 +0200

Hi All

I am trying to load binary data files into Octave (version 3.6.4 on Mac OS X). 
The data file specification says the file format is HDF5 / h5. An example for 
such a file is available here:
http://www.picarro.com/sites/default/files/CFADS2135-20101206-081426-PressureCal-1.h5

I tried to load the data from this file using the “load” command, but that did 
not work (see log below). Is this an issue with the file, or with Octave? 
Anything I could try to make this work better?

Thanks
Matthias


—————————————————————
octave:23> load CFADS2135-20101206-081426-PressureCal-1.h5 
error: load: error while reading hdf5 item results
HDF5-DIAG: Error detected in HDF5 (1.8.12) thread 0:
  #000: H5Gdeprec.c line 780 in H5Giterate(): group iteration failed
    major: Symbol table
    minor: Iteration failed
  #001: H5Gint.c line 844 in H5G_iterate(): error iterating over links
    major: Symbol table
    minor: Iteration failed
  #002: H5Gobj.c line 708 in H5G__obj_iterate(): can't iterate over symbol table
    major: Symbol table
    minor: Iteration failed
  #003: H5Gstab.c line 566 in H5G__stab_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: H5B.c line 1298 in H5B_iterate(): B-tree iteration failed
    major: B-Tree node
    minor: Iteration failed
  #005: H5B.c line 1221 in H5B_iterate_helper(): iterator function failed
    major: B-Tree node
    minor: Unable to list node
  #006: H5Gnode.c line 1039 in H5G__node_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location
—————————————————————


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