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indexed assignment for sparse matrices in ov-2.9.4


From: Thomas Kasper
Subject: indexed assignment for sparse matrices in ov-2.9.4
Date: Thu, 19 Jan 2006 08:12:42 -0600

Hi,

I have a problem with indexed assignment for sparse matrices in
octave-2.9.4. See below for an example:

octave:1> version
ans = 2.9.4
octave:2> a = sparse(eye(3))
a =

Compressed Column Sparse (rows = 3, cols = 3, nnz = 3)

  (1, 1) -> 1
  (2, 2) -> 1
  (3, 3) -> 1

octave:3> a(:,[3,2,1]) = a
a =

Compressed Column Sparse (rows = 3, cols = 3, nnz = 3)

  (1, 1) -> 1
  (2, 2) -> 1
  (3, 3) -> 1

octave:4>

My understanding is that the command in line 3 should permute the columns of
"a". In fact this is what I get for "a" being a dense matrix, so I think it
might be a bug.
As part of the sparse-functionality seems to depend on external libraries,
I installed UMFPACK, COLAMD and CCOLAMD, but to no avail; I keep getting the
same result.

Am I missing a patch, or is there still some unresolved dependency? Normally
I would have my package manager take care of all this, but as he obstinately
refused to download - let alone install - a version qualified as testing or
unstable, I had to do it on my own. 

For configuration details see below

Any help is appreciated. Thank you a lot
Thomas Kasper

Configuration (please do not edit this section):
-----------------------------------------------

uname output:     Linux desktop 2.6.12-gentoo-r9 #1 SMP Sun Aug 21 19:12:07
CEST 2005 i686 Intel(R) Pentium(R) 4 CPU 3.06GHz GenuineIntel GNU/Linux
configure opts:   '--enable-shared' '--without-cholmod'
Fortran compiler: g77
FFLAGS:           -O -mieee-fp
F2C:              
F2CFLAGS:         
FLIBS:            -L/usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.5-20050130
-L/usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.5-20050130/../../../../i686-pc-linux-gnu/lib
-L/usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.5-20050130/../../.. -lz -lfrtbegin
-lg2c -lm -lgcc_s
CPPFLAGS:         
INCFLAGS:         -I. -I. -I./liboctave -I./src -I./libcruft/misc 
C compiler:       gcc, version 3.3.5-20050130 (Gentoo 3.3.5.20050130-r1,
ssp-3.3.5.20050130-1, pie-8.7.7.1)
CFLAGS:           -g -O2
CPICFLAG:         -fPIC
C++ compiler:     g++, version 3.3.5-20050130
CXXFLAGS:         -g -O2
CXXPICFLAG:       -fPIC
LD_CXX:           g++
LDFLAGS:          
LIBFLAGS:         -L.
RLD_FLAG:         -Wl,-rpath -Wl,/usr/local/lib/octave-2.9.4
BLAS_LIBS:        -lcblas -lf77blas -latlas
FFTW_LIBS:        -lfftw3
LIBS:             -lreadline  -lncurses -ldl -lz -lm 
LEXLIB:           
LIBPLPLOT:        
LIBDLFCN:         
LIBGLOB:          
SED:              /usr/bin/sed
DEFS:

  -DPACKAGE_NAME="" -DPACKAGE_TARNAME="" -DPACKAGE_VERSION=""
  -DPACKAGE_STRING="" -DPACKAGE_BUGREPORT="" -DOCTAVE_SOURCE=1
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  -DF77_FUNC(name,NAME)=name ## _ -DF77_FUNC_(name,NAME)=name ##
  __ -DHAVE_BLAS=1 -DHAVE_UMFPACK_UMFPACK_H=1 -DHAVE_UMFPACK=1
  -DHAVE_UMFPACK_COLAMD_H=1 -DHAVE_COLAMD=1 -DHAVE_UMFPACK_CCOLAMD_H=1
  -DHAVE_CCOLAMD=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPWNAM=1 -DHAVE_DEV_T=1
  -DHAVE_INO_T=1 -DHAVE_NLINK_T=1 -DHAVE_NLINK_T=1 -DHAVE_LONG_LONG_INT=1
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  -DHAVE_GETGRENT=1 -DHAVE_GETGRGID=1 -DHAVE_GETGRNAM=1
  -DHAVE_GETPGRP=1 -DHAVE_GETPID=1 -DHAVE_GETPPID=1 -DHAVE_GETPWENT=1
  -DHAVE_GETPWUID=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_GETUID=1 -DHAVE_GETWD=1
  -DHAVE_KILL=1 -DHAVE_LINK=1 -DHAVE_LOCALTIME_R=1 -DHAVE_LSTAT=1
  -DHAVE_MEMMOVE=1 -DHAVE_MKDIR=1 -DHAVE_MKFIFO=1 -DHAVE_MKSTEMP=1
  -DHAVE_ON_EXIT=1 -DHAVE_PIPE=1 -DHAVE_POLL=1 -DHAVE_PUTENV=1
  -DHAVE_RAISE=1 -DHAVE_READLINK=1 -DHAVE_RENAME=1 -DHAVE_RINDEX=1
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  -DHAVE_STRNCASECMP=1 -DHAVE_STRPTIME=1 -DHAVE_SYMLINK=1 -DHAVE_TEMPNAM=1
  -DHAVE_UMASK=1 -DHAVE_UNLINK=1 -DHAVE_USLEEP=1 -DHAVE_VFPRINTF=1
  -DHAVE_VSPRINTF=1 -DHAVE_VSNPRINTF=1 -DHAVE_WAITPID=1 -DHAVE_LIBDL=1
  -DHAVE_DLOPEN=1 -DHAVE_DLSYM=1 -DHAVE_DLERROR=1 -DHAVE_DLCLOSE=1
  -DHAVE_DLOPEN_API=1 -DENABLE_DYNAMIC_LINKING=1 -DHAVE_TIMEVAL=1
  -DHAVE_FINITE=1 -DHAVE_ISNAN=1 -DHAVE_ISINF=1 -DHAVE_COPYSIGN=1
  -DHAVE_DECL_SIGNBIT=1 -DHAVE_ACOSH=1 -DHAVE_ASINH=1 -DHAVE_ATANH=1
  -DHAVE_ERF=1 -DHAVE_ERFC=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1
  -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_RDEV=1
  -DHAVE_STRUCT_TM_TM_ZONE=1 -DHAVE_TM_ZONE=1 -DUSE_READLINE=1
  -DEXCEPTION_IN_MATH=1 -DRETSIGTYPE=void -DSYS_SIGLIST_DECLARED=1
  -DHAVE_SYS_SIGLIST=1 -DHAVE_POSIX_SIGNALS=1 -DHAVE_GETRUSAGE=1
  -DHAVE_TIMES=1 -DYYTEXT_POINTER=1 -DGNUPLOT_BINARY="gnuplot"
  -DGNUPLOT_HAS_FRAMES=1

User-preferences (please do not edit this section):
--------------------------------------------------

  DEFAULT_EXEC_PATH =
"/usr/local/libexec/octave/2.9.4/site/exec/i686-pc-linux-gnu:/usr/local/libexec/octave/site/exec/i686-pc-linux-gnu:/usr/local/libexec/octave/2.9.4/exec/i686-pc-linux-gnu:/usr/local/bin"
  DEFAULT_LOADPATH =
".:/usr/local/libexec/octave/2.9.4/site/oct/i686-pc-linux-gnu//:/usr/local/libexec/octave/site/oct/api-v17/i686-pc-linux-gnu//:/usr/local/libexec/octave/site/oct/i686-pc-linux-gnu//:/usr/local/share/octave/2.9.4/site/m//:/usr/local/share/octave/site/api-v17/m//:/usr/local/share/octave/site/m//:/usr/local/libexec/octave/2.9.4/oct/i686-pc-linux-gnu//:/usr/local/share/octave/2.9.4/m//"
  EDITOR = "/bin/nano"
  EXEC_PATH =
":/usr/kde/3.4/bin:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/3.3.5-20050130:/usr/qt/3/bin:/usr/kde/3.4/bin:/usr/java/j2sdk1.4.2_09/bin"
  IMAGEPATH = ".:/usr/local/share/octave/2.9.4/imagelib//"
  INFO_FILE = "/usr/local/info/octave.info"
  INFO_PROGRAM = "info"
  LOADPATH = ":"
  PAGER = "/usr/bin/less"
  PS1 = "\\s:\\#> "
  PS2 = "> "
  PS4 = "+ "
  automatic_replot = 1
  beep_on_error = 0
  completion_append_char = " "
  crash_dumps_octave_core = 1
# default_save_format = <no value or error in displaying it>
  echo_executing_commands = 0
  fixed_point_format = 0
  gnuplot_binary = "gnuplot"
  gnuplot_command_end = "\n"
  gnuplot_command_plot = "pl"
  gnuplot_command_replot = "rep"
  gnuplot_command_splot = "sp"
  gnuplot_command_title = "t"
  gnuplot_command_using = "u"
  gnuplot_command_with = "w"
# gnuplot_has_frames = <no value or error in displaying it>
  history_file = "/home/thomas/.octave_hist"
  history_size = 1024
  ignore_function_time_stamp = "system"
  max_recursion_depth = 256
  output_max_field_width = 10
  output_precision = 5
  page_output_immediately = 0
  page_screen_output = 1
  print_answer_id_name = 1
  print_empty_dimensions = 1
  print_rhs_assign_val = 0
# return_last_computed_value = <no value or error in displaying it>
  save_precision = 15
  saving_history = 1
  sighup_dumps_octave_core = 1
  sigterm_dumps_octave_core = 1
  silent_functions = 0
  split_long_rows = 1
  string_fill_char = " "
  struct_levels_to_print = 2
  suppress_verbose_help_message = 0
  warn_assign_as_truth_value = 1
  warn_divide_by_zero = 1
  warn_empty_list_elements = 0
  warn_fortran_indexing = 0
  warn_function_name_clash = 1
  warn_future_time_stamp = 1
  warn_imag_to_real = 0
  warn_missing_semicolon = 0
  warn_neg_dim_as_zero = 0
  warn_num_to_str = 1
  warn_resize_on_range_error = 0
  warn_separator_insert = 0
  warn_single_quote_string = 0
  warn_str_to_num = 0
  warn_undefined_return_values = 1
  warn_variable_switch_label = 0

-- 
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