[Help-gsl] how to install gsl then install MotIV Rpackage

[Wei QIAO]

Hi dear gsl developers,
Thank you for developing gsl. But now I came across a problem I think it is
something about install gsl then modify LD_LOBRARY_PATH.
When I install ATACseqQC Rpackage in centos by OS Bioconductor version 3.9
(BiocManager 1.30.4), R 3.6.1 (2019-07-05)I  found these warnings:

Warning messages:

1: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :

  installation of package ‘MotIV’ had non-zero exit status

2: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :

  installation of package ‘motifStack’ had non-zero exit status

3: In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :

  installation of package ‘ATACseqQC’ had non-zero exit status
then I looked its history:

ERROR: dependency ‘rGADEM’ is not available for package ‘MotIV’

ERROR: dependency ‘MotIV’ is not available for package ‘motifStack’

ERROR: dependency ‘motifStack’ is not available for package ‘ATACseqQC’
so I decided to install one by one:
BiocManager::install("rGADEM")

BiocManager::install("MotIV")

BiocManager::install("motifStack")

BiocManager::install("ATACseqQC")
but unfortunately only rGADEM successed.

DONE (rGADEM)
and the error when install MotIV is:

* installing *source* package ‘MotIV’ ...

** using staged installation

checking for gcc... gcc -std=gnu99

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables...

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc -std=gnu99 accepts -g... yes

checking for gcc -std=gnu99 option to accept ISO C89... none needed

checking for gsl-config... /usr/local/bin/gsl-config

checking for GSL - version >= 1.6... no

*** Could not run GSL test program, checking why...

*** The test program compiled, but did not run. This usually means

*** that the run-time linker is not finding GSL or finding the wrong

*** version of GSL. If it is not finding GSL, you'll need to set your

*** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point

*** to the installed location  Also, make sure you have run ldconfig if that

*** is required on your system

***

*** If you have an old version installed, it is best to remove it, although

*** you may also be able to get things to work by modifying LD_LIBRARY_PATH

configure: error: Cannot find Gnu Scientific Library >=1.6

ERROR: configuration failed for package ‘MotIV’

* removing
‘/mnt/disk1/qiaowei/pepatac_tutorial/tools/pepatac/tools/R-3.6.1/library/MotIV’


The downloaded source packages are in

‘/tmp/RtmpkYgayg/downloaded_packages’

Updating HTML index of packages in '.Library'

Making 'packages.html' ... done

Warning message:

In install.packages(pkgs = doing, lib = lib, repos = repos, ...) :

  installation of package ‘MotIV’ had non-zero exit status
so I guess there is something wrong with my gsl and its configure.then I
decided to install gsl by myself, but not like others, I am not root and I
cannot use

sudo apt-get install libgsl0ldbl
so I get the three file  from http://mirrors.nju.edu.cn/gnu/gsl/

-rw-r--r--. 1 qiaowei qiaowei 1.7K Oct  2 12:39 gsl_key.txt

-rwxrwxr-x. 1 qiaowei qiaowei  287 Oct  2 12:27 gsl-2.6.tar.gz.sig

-rwxrwxr-x. 1 qiaowei qiaowei 7.1M Oct  2 12:27 gsl-2.6.tar.gz
but the question is I don't know how to do the next steps and I also didn't
find README and INSTALL files.And another thing is how can I well configure
in order to install MotIV Rpackage successfully.
Thank you so much in advance!

Regards,
Wei