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Re: [help-GIFT] install GIFT

From: Rahayu A Hamid
Subject: Re: [help-GIFT] install GIFT
Date: Wed, 20 Jan 2010 09:46:34 +0800 (MYT) 
Hi,

I think I've got all the things working (gift server, apache and php)..but I'm 
not quite sure if I'm doing it correctly. I've indexed some images and its at 
/home/rahayu/
When i typed gift, this is what i got:

Not testing file:libperl.so.5.10.0 (File name does not match plugin name) 
Not testing file:libtiff.so.4 (File name does not match plugin name) 
FINISHED Configuring CDynamicQueryFactory 
----------------------------------------
The current configuration directory is: /home/rahayu
----------------------------------------
Opening port 12789
----------------------------------------
TCP socket successfully initialized:7
TCP socket successfully initialized:8
Waiting for connection...
...select
trying to accept 7 1
Accept and serve: 7
connected: 7->3
Accepted Connection!
Accepted from adress [Peer INET Address: 127.0.0.1]
CCommunicationHandler.cc:638:readAndParse before parse
<?xml version="1.0" standalone="no" ?><!DOCTYPE mrml SYSTEM 
"http://www.mrml.net/specification/v1_0/MRML_v10.dtd";><mrml>STARTING:mrml
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
<get-collections/>STARTING:get-collections
ENDING:get-collections
</mrml>ENDING:mrml
CCommunicationHandler.cc:729:readAndParse before visit
++//CCommunicationHandler.cc:732:readAndParse before check
CHECKING: __ROOT__
++//CHECKING SUCCEEDED
VISITING: __ROOT__
CHECKING: mrml
++//CHECKING SUCCEEDED
VISITING: mrml
CHECKING: get-collections
+/CHECKING SUCCEEDED
VISITING: get-collections
getcollections
x<collection-list>
<collection collection-id="c-2-55-13-23-3-108-3-113-0" collection-name="RSNA" 
cui-algorithm-id-list-id="ail-inverted-file" />
<collection collection-id="c-21-31-0-8-11-109-2-341-0" collection-name="try" 
cui-algorithm-id-list-id="ail-inverted-file" />
<collection collection-id="c-30-17-1-15-0-110-5-14-0" 
collection-name="image.orig" cui-algorithm-id-list-id="ail-inverted-file" />
</collection-list>

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Unknown session 
endMultiRequest: WRITING: <mrml  just-for-test="and-of-course-for-fun" 
session-id="" >
    <cui-time-stamp  calendar-time="Wed Jan 20 12:20:17 2010
" />
    <collection-list  >
        <collection  collection-id="c-2-55-13-23-3-108-3-113-0" 
collection-name="RSNA" cui-algorithm-id-list-id="ail-inverted-file" 
cui-base-dir="/databases/casimageRSNA/" 
cui-feature-description-location="InvertedFileFeatureDescription.db" 
cui-feature-file-location="url2fts.xml" 
cui-inverted-file-location="InvertedFile.db" cui-number-of-images="8000" 
cui-offset-file-location="InvertedFileOffset.db" >
            <query-paradigm-list  >
                <query-paradigm  type="inverted-file" />
                <query-paradigm  type="perl-demo" />
            </query-paradigm-list>
        </collection>
        <collection  collection-id="c-21-31-0-8-11-109-2-341-0" 
collection-name="try" cui-algorithm-id-list-id="ail-inverted-file" 
cui-base-dir="/home/rahayu/gift-indexing-data/try/" 
cui-feature-description-location="InvertedFileFeatureDescription.db" 
cui-feature-file-location="url2fts.xml" 
cui-inverted-file-location="InvertedFile.db" cui-number-of-images="0" 
cui-offset-file-location="InvertedFileOffset.db" >
            <query-paradigm-list  >
                <query-paradigm  type="inverted-file" />
                <query-paradigm  type="perl-demo" />
            </query-paradigm-list>
        </collection>
        <collection  collection-id="c-30-17-1-15-0-110-5-14-0" 
collection-name="image.orig" cui-algorithm-id-list-id="ail-inverted-file" 
cui-base-dir="/home/rahayu/gift-indexing-data/image.orig/" 
cui-feature-description-location="InvertedFileFeatureDescription.db" 
cui-feature-file-location="url2fts.xml" 
cui-inverted-file-location="InvertedFile.db" cui-number-of-images="0" 
cui-offset-file-location="InvertedFileOffset.db" >
            <query-paradigm-list  >
                <query-paradigm  type="inverted-file" />
                <query-paradigm  type="perl-demo" />
            </query-paradigm-list>
        </collection>
    </collection-list>
    <cui-time-stamp  calendar-time="Wed Jan 20 12:20:17 2010
" />
</mrml>

waitingendwaiting0
waitingendwaiting0
Message successfully sent!
CCommunicationHandler.cc:735:readAndParse after visit
flushing everything!
shutting down the socket!
waitreadstream (I)
Successfully created new message processing thread
Successfully detached thread
endfor 
Waiting for connection...
reading eof
FINISHED reading eof
waitreadstream (II)
Deleting thread parameters
DONE
...select
trying to accept 7 1
Accept and serve: 7
connected: 7->3
Accepted Connection!
Accepted from adress [Peer INET Address: 127.0.0.1]
CCommunicationHandler.cc:638:readAndParse before parse
<?xml version="1.0" standalone="no" ?><!DOCTYPE mrml SYSTEM 
"http://www.mrml.net/specification/v1_0/MRML_v10.dtd";><mrml>STARTING:mrml
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
<get-algorithms collection-id=""/>STARTING:get-algorithms
ENDING:get-algorithms
</mrml>ENDING:mrml
CCommunicationHandler.cc:729:readAndParse before visit
++//CCommunicationHandler.cc:732:readAndParse before check
CHECKING: __ROOT__
++//CHECKING SUCCEEDED
VISITING: __ROOT__
CHECKING: mrml
++//CHECKING SUCCEEDED
VISITING: mrml
CHECKING: get-algorithms
+/CHECKING SUCCEEDED
VISITING: get-algorithms
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Unknown session 
endMultiRequest: WRITING: <mrml  just-for-test="and-of-course-for-fun" 
session-id="" >
    <cui-time-stamp  calendar-time="Wed Jan 20 12:20:17 2010
" />
    <algorithm-list  >
        <algorithm  algorithm-id="adefault" algorithm-name="Separate 
Normalisation" algorithm-type="adefault" 
collection-id="c-2-55-13-23-3-108-3-113-0" cui-base-type="multiple" 
cui-block-color-blocks="no" cui-block-color-histogram="no" 
cui-block-texture-blocks="no" cui-block-texture-histogram="no" 
cui-pr-percentage-of-features="70" cui-weighting-function="ClassicalIDF" >
            <algorithm  algorithm-id="sub1" algorithm-name="sub1" 
algorithm-type="sub1" cui-base-type="inverted_file" 
cui-block-color-blocks="yes" cui-block-texture-blocks="yes" 
cui-block-texture-histogram="yes" cui-pr-percentage-of-features="100" />
            <algorithm  algorithm-id="sub2" algorithm-name="sub2" 
algorithm-type="sub2" cui-base-type="inverted_file" 
cui-block-color-histogram="yes" cui-block-texture-blocks="yes" 
cui-block-texture-histogram="yes" />
            <algorithm  algorithm-id="sub3" algorithm-name="sub3" 
algorithm-type="sub3" cui-base-type="inverted_file" 
cui-block-color-blocks="yes" cui-block-color-histogram="yes" 
cui-block-texture-blocks="yes" cui-pr-percentage-of-features="100" />
            <algorithm  algorithm-id="sub4" algorithm-name="sub4" 
algorithm-type="sub4" cui-base-type="inverted_file" 
cui-block-color-blocks="yes" cui-block-color-histogram="yes" 
cui-block-texture-histogram="yes" />
            <query-paradigm-list  >
                <query-paradigm  />
            </query-paradigm-list>
            <property-sheet  maxsubsetsize="1" minsubsetsize="0" 
property-sheet-id="cui-p-1" property-sheet-type="subset" send-type="none" >
                <property-sheet  caption="Modify default configuration" 
property-sheet-id="cui-p0" property-sheet-type="set-element" send-type="none" >
                    <property-sheet  caption="Prune at % of features" from="20" 
property-sheet-id="cui-p15" property-sheet-type="numeric" 
send-name="cui-pr-percentage-of-features" send-type="attribute" send-value="70" 
step="5" to="100" />
                    <property-sheet  maxsubsetsize="4" minsubsetsize="1" 
property-sheet-id="cui-p1" property-sheet-type="subset" send-type="none" >
                        <property-sheet  caption="Colour blocks" 
property-sheet-id="cui-p12" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-color-blocks" 
send-type="attribute" send-value="yes" />
                        <property-sheet  caption="Gabor blocks" 
property-sheet-id="cui-p14" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-texture-blocks" 
send-type="attribute" send-value="yes" />
                        <property-sheet  caption="Gabor histogram" 
property-sheet-id="cui-p13" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-texture-histogram" 
send-type="attribute" send-value="yes" />
                        <property-sheet  caption="Colour histogram" 
property-sheet-id="cui-p11" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-color-histogram" 
send-type="attribute" send-value="yes" />
                    </property-sheet>
                </property-sheet>
            </property-sheet>
        </algorithm>
    </algorithm-list>
    <cui-time-stamp  calendar-time="Wed Jan 20 12:20:17 2010
" />
</mrml>

waitingendwaiting0
waitingendwaiting0
Message successfully sent!
CCommunicationHandler.cc:735:readAndParse after visit
flushing everything!
shutting down the socket!
waitreadstream (I)
Successfully created new message processing thread
Successfully detached thread
endfor 
Waiting for connection...
reading eof
FINISHED reading eof
waitreadstream (II)
Deleting thread parameters
DONE
...select
trying to accept 7 1
Accept and serve: 7
connected: 7->3
Accepted Connection!
Accepted from adress [Peer INET Address: 127.0.0.1]
CCommunicationHandler.cc:638:readAndParse before parse
<?xml version="1.0" standalone="no" ?><!DOCTYPE mrml SYSTEM 
"http://www.mrml.net/specification/v1_0/MRML_v10.dtd";><mrml 
session-id="dummy_session_identifier">STARTING:mrml

1:--------------------TEXT_
_
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
<open-session user-name="anonymous"
                    session-name="monosock_default_session" 
/>STARTING:open-session
ENDING:open-session

1:--------------------TEXT_
_
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
 1:--------------------TEXT_ _
</mrml>ENDING:mrml
CCommunicationHandler.cc:729:readAndParse before visit
++/+//CCommunicationHandler.cc:732:readAndParse before check
CHECKING: __ROOT__
++/+//CHECKING SUCCEEDED
VISITING: __ROOT__
CHECKING: mrml
++/+//CHECKING SUCCEEDED
VISITING: mrml
CHECKING: open-session
+/+/CHECKING SUCCEEDED
VISITING: open-session
HIER OPEN SESSION
ENTERING OPENSESSION
making a new session II
We have 1 algorithms in the algorithm collection.
CAlgorithmCollection.cc:284:default algorithm found
CAlgorithmCollection.cc:299:going to check default algorithm
+/+/+/+/++//+++/++/+/+/+////CAlgorithmCollection.cc:303:checked, now copying 
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CAlgorithmCollection.cc:305:copied, now checking again 
+/+/+/+/++//+++/++/+/+/+////[set
adefault
set]
[build
0x8144430
1NUMBER OF CHILDREN that are ALGORITHMS 4
23.0x8144758
1234.0x81449c8
1234.0x8144bf8
1234.0x8144e68
12344-Algorithm CONFIGURED-: configuration
<algorithm  algorithm-id="adefault" algorithm-name="Separate Normalisation" 
algorithm-type="adefault" collection-id="c-2-55-13-23-3-108-3-113-0" 
cui-base-type="multiple" cui-block-color-blocks="no" 
cui-block-color-histogram="no" cui-block-texture-blocks="no" 
cui-block-texture-histogram="no" cui-pr-percentage-of-features="70" 
cui-weighting-function="ClassicalIDF" >
    <algorithm  algorithm-id="sub1" algorithm-name="sub1" algorithm-type="sub1" 
collection-id="c-2-55-13-23-3-108-3-113-0" cui-base-type="inverted_file" 
cui-block-color-blocks="yes" cui-block-color-histogram="no" 
cui-block-texture-blocks="yes" cui-block-texture-histogram="yes" 
cui-pr-percentage-of-features="100" cui-weighting-function="ClassicalIDF" />
    <algorithm  algorithm-id="sub2" algorithm-name="sub2" algorithm-type="sub2" 
collection-id="c-2-55-13-23-3-108-3-113-0" cui-base-type="inverted_file" 
cui-block-color-blocks="no" cui-block-color-histogram="yes" 
cui-block-texture-blocks="yes" cui-block-texture-histogram="yes" 
cui-pr-percentage-of-features="70" cui-weighting-function="ClassicalIDF" />
    <algorithm  algorithm-id="sub3" algorithm-name="sub3" algorithm-type="sub3" 
collection-id="c-2-55-13-23-3-108-3-113-0" cui-base-type="inverted_file" 
cui-block-color-blocks="yes" cui-block-color-histogram="yes" 
cui-block-texture-blocks="yes" cui-block-texture-histogram="no" 
cui-pr-percentage-of-features="100" cui-weighting-function="ClassicalIDF" />
    <algorithm  algorithm-id="sub4" algorithm-name="sub4" algorithm-type="sub4" 
collection-id="c-2-55-13-23-3-108-3-113-0" cui-base-type="inverted_file" 
cui-block-color-blocks="yes" cui-block-color-histogram="yes" 
cui-block-texture-blocks="no" cui-block-texture-histogram="yes" 
cui-pr-percentage-of-features="70" cui-weighting-function="ClassicalIDF" />
    <query-paradigm-list  >
        <query-paradigm  />
    </query-paradigm-list>
    <property-sheet  maxsubsetsize="1" minsubsetsize="0" 
property-sheet-id="cui-p-1" property-sheet-type="subset" send-type="none" >
        <property-sheet  caption="Modify default configuration" 
property-sheet-id="cui-p0" property-sheet-type="set-element" send-type="none" >
            <property-sheet  caption="Prune at % of features" from="20" 
property-sheet-id="cui-p15" property-sheet-type="numeric" 
send-name="cui-pr-percentage-of-features" send-type="attribute" send-value="70" 
step="5" to="100" />
            <property-sheet  maxsubsetsize="4" minsubsetsize="1" 
property-sheet-id="cui-p1" property-sheet-type="subset" send-type="none" >
                <property-sheet  caption="Colour blocks" 
property-sheet-id="cui-p12" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-color-blocks" 
send-type="attribute" send-value="yes" />
                <property-sheet  caption="Gabor blocks" 
property-sheet-id="cui-p14" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-texture-blocks" 
send-type="attribute" send-value="yes" />
                <property-sheet  caption="Gabor histogram" 
property-sheet-id="cui-p13" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-texture-histogram" 
send-type="attribute" send-value="yes" />
                <property-sheet  caption="Colour histogram" 
property-sheet-id="cui-p11" property-sheet-type="set-element" 
send-boolean-inverted="yes" send-name="cui-block-color-histogram" 
send-type="attribute" send-value="yes" />
            </property-sheet>
        </property-sheet>
    </property-sheet>
</algorithm>
-Algorithm CONFIGURED-
[mQ:multiple
mQ]
Build subalgorithm0x8144758 {algorithm}:inverted_file
really doing it
[mQ:inverted_file
mQ]
hier 
sub1
checking before making children 
making children 
Deleting mContentdoneCDynamicQueryFactory

GQOUERY0
CQInvertedFile.cc:255:Diagnostic output 0x81531d0

CAccessorFactoryContainer::openAccessor:inverted_file
 NEWLY GENERATED.

CALLED: libGIFTAcInvertedFile_makeAccessor

Opening /databases/casimageRSNA/url2fts.xml ...FAILED!constructing parser
Reading 
-1 characters
Read url2fts.xml
libGIFTAcURL2FTS/cc/CAcURL2FTS.cc:190: XML ERROR: CAcURL2FTS.cc:202:throwing 
0x81540d0
CAccessor.cccalling destructor
CAccessor.cccalling destructor

/DELGQOUERY0
CHECKING: 
+/+/CHECKING SUCCEEDED
VISITING: 
endMultiRequest: WRITING: <mrml  just-for-test="and-of-course-for-fun" 
session-id="dummy_session_identifier" >
    <cui-time-stamp  calendar-time="Wed Jan 20 12:20:17 2010
" />
    <error  message="libGIFTAcURL2FTS/cc/CAcURL2FTS.cc:196Could not read file 
/databases/casimageRSNA/url2fts.xml" />
    <cui-time-stamp  calendar-time="Wed Jan 20 12:20:17 2010
" />
</mrml>

waitingendwaiting0
waitingendwaiting0
Message successfully sent!
flushing everything!
shutting down the socket!
waitreadstream (I)
reading eof
FINISHED reading eof
waitreadstream (II)
Deleting thread parameters
DONE
Successfully created new message processing thread
Successfully detached thread

then when I Typed the URL of the client interface in a browser..I just see the 
frame of the page without any images..and its taking ages to load. Am I doing 
it right?

Thanks in advance.

Rahayu
 

----- Original Message -----
From: "Henning Müller" <address@hidden>
To: "Rahayu A Hamid" <address@hidden>
Cc: "Wolfgang Müller" <address@hidden>, "help gift" <address@hidden>
Sent: Friday, 15 January, 2010 19:17:41 GMT +10:00 Canberra / Melbourne / Sydney
Subject: Re: [help-GIFT] install GIFT

Hi,

there are several versions of the PHP interface. One can be found at 
http://medgift.unige.ch/PHP_Gift-stable.tar

To use it you copy it into a directory accessible by apache and you need 
to have php activated. Typing the URL of this directory in a browser 
should make. There is a config file where you can also change pathes and 
that should be a adapted.

Cheers, Henning


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