Re: [O] Bug: Generation of pdf when using OPTIONS: H: faulty [7.9.2 (release_7.9.2-588-g8fb2cb @ /home/rkrug/.emacs.d/org-mode/lisp/)]

[Rainer M Krug]

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Hi

Can somebody please confirm if this is a bug or caused by my setup?

Thanks,

Rainer

On 15/11/12 15:03, Rainer M Krug wrote:
> Hi
> 
> When exporting the tree below (Linear Mixed Effect Models) as pdf, the some 
> headers are omitted
> when OPTIONS: H: is used. When this option is removed, the export is fine, 
> but as expected the
> fourth level headers are converted to lists, but I would like to have them as 
> headers in the 
> toc. This worked in earlier versions of org, but unfortunately I can not tell 
> you when it
> changed.
> 
> I attach the org file, tex and pdf
> 
> Cheers,
> 
> Rainer
> 
> 
> #+OPTIONS: toc:5 #+OPTIONS: H:5
> 
> * Linear Mixed Effect Models Load the package nlme #+begin_src R # #+end_src
> 
> ** Brunia laevis *** Height Clean old =dat.*= objects out #+begin_src R # 
> #+end_src
> 
> **** Define the "default" models #+begin_src R # #+end_src
> 
> **** Fit a linear model as a baseline #+begin_src R # #+end_src
> 
> **** Fit the lme for different random effects random intercept and slope 
> #+begin_src R # 
> #+end_src
> 
> only random intercept #+begin_src R # #+end_src
> 
> 
> 
> Emacs  : GNU Emacs 24.2.1 (i686-pc-linux-gnu, GTK+ Version 2.24.13) of 
> 2012-11-06 on dubnium,
> modified by Debian Package: Org-mode version 7.9.2 (release_7.9.2-588-g8fb2cb 
> @
> /home/rkrug/.emacs.d/org-mode/lisp/)
> 
> current state: ============== (setq org-ctrl-c-ctrl-c-hook 
> '(org-babel-hash-at-point
> org-babel-execute-safely-maybe) org-export-latex-packages-alist '(("" "color" 
> t) ("" "listings"
> t)) org-src-fontify-natively t org-plantuml-jar-path 
> "/home/rkrug/jar/plantuml.jar" 
> org-export-kill-product-buffer-when-displayed t org-export-with-drawers nil 
> org-ellipsis "? ?
> ?" org-export-with-tags 'not-in-toc 
> org-export-preprocess-before-selecting-backend-code-hook
> '(org-beamer-select-beamer-code) org-tab-first-hook 
> '(org-hide-block-toggle-maybe
> org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe
> org-babel-header-arg-expand) org-cycle-hook '(org-cycle-hide-archived-subtrees
> org-cycle-hide-drawers org-cycle-hide-inline-tasks org-cycle-show-empty-lines 
> org-optimize-window-after-visibility-change) org-agenda-before-write-hook
> '(org-agenda-add-entry-text) org-confirm-babel-evaluate nil 
> org-speed-command-hook
> '(org-speed-command-default-hook org-babel-speed-command-hook) 
> org-src-window-setup
> 'current-window org-babel-pre-tangle-hook '(save-buffer) org-occur-hook
> '(org-first-headline-recenter) org-structure-template-alist '(("lua" 
> "#+begin_src lua \n
> ?\n#+end_src" "<src lang=\"lua\">\n\n</src>") ("r" "#+begin_src R 
> ?\n\n#+end_src" "<src
> lang=\"R\">\n\n</src>") ("s" "#+BEGIN_SRC ?\n\n#+END_SRC" "<src 
> lang=\"?\">\n\n</src>") ("e"
> "#+BEGIN_EXAMPLE\n?\n#+END_EXAMPLE" "<example>\n?\n</example>") ("q"
> "#+BEGIN_QUOTE\n?\n#+END_QUOTE" "<quote>\n?\n</quote>") ("v" 
> "#+BEGIN_VERSE\n?\n#+END_VERSE"
> "<verse>\n?\n</verse>") ("c" "#+BEGIN_CENTER\n?\n#+END_CENTER" 
> "<center>\n?\n</center>") ("l"
> "#+BEGIN_LaTeX\n?\n#+END_LaTeX" "<literal style=\"latex\">\n?\n</literal>") 
> ("L" "#+LaTeX: "
> "<literal style=\"latex\">?</literal>") ("h" "#+BEGIN_HTML\n?\n#+END_HTML" 
> "<literal
> style=\"html\">\n?\n</literal>") ("H" "#+HTML: " "<literal 
> style=\"html\">?</literal>") ("a"
> "#+BEGIN_ASCII\n?\n#+END_ASCII") ("A" "#+ASCII: ") ("i" "#+INDEX: ?" 
> "#+INDEX: ?") ("I"
> "#+INCLUDE: %file ?" "<include file=%file markup=\"?\">")) org-metaup-hook
> '(org-babel-load-in-session-maybe) org-confirm-elisp-link-function 
> 'yes-or-no-p 
> org-export-latex-format-toc-function 'org-export-latex-format-toc-default 
> org-hide-leading-stars t org-capture-templates '(("p" "Problem to be logged 
> in buffer" entry 
> (file+headline (buffer-file-name) "QUESTIONS") "* %?\n- revision :: 
> %(symbol-name
> (vc-working-revision (buffer-file-name (org-capture-get 
> :original-buffer))))\n- state    ::
> %(symbol-name (vc-state (buffer-file-name (org-capture-get 
> :original-buffer))))\n- link     ::
> %a \n- author   :: Rainer M Krug, email: address@hidden") ("c" "Changes to be 
> logged in
> buffer" entry (file+headline (buffer-file-name) "CHANGES") "* %T %? \n- 
> revision ::
> %(symbol-name (vc-working-revision (buffer-file-name (org-capture-get 
> :original-buffer))))\n-
> state    :: %(symbol-name (vc-state (buffer-file-name (org-capture-get 
> :original-buffer))))\n-
> link     :: %a \n- author   :: Rainer M Krug, email: address@hidden %n") ("t" 
> "TODO to be
> logged in buffer" entry (file+headline (buffer-file-name) "TODOs") "* TODO 
> %?\n- revision ::
> %(symbol-name (vc-working-revision (buffer-file-name (org-capture-get 
> :original-buffer))))\n-
> state    :: %(symbol-name (vc-state (buffer-file-name (org-capture-get 
> :original-buffer))))\n-
> link     :: %a \n- author   :: Rainer M Krug, email: address@hidden") ("T" 
> "Todo to be logged
> in Notes.org" entry (file+headline (concat org-directory "/Notes.org") 
> "Tasks") "* TODO %?\n
> %i\n %T\n %a") ("M" "Misc to be logged in Notes.org" entry (file+headline 
> (concat org-directory
> "/Notes.org") "Misc") "* %?\n  %i\n %T\n  %a") ("I" "Info to be logged in 
> Notes.org" entry 
> (file+headline (concat org-directory "/Notes.org") "Information") "* %?\n  
> %i\n %T\n  %a") ("B"
> "Things I can blog about to be logged in Notes.org" entry (file+headline 
> (concat org-directory
> "/Notes.org") "To Blog") "* %?\n  %i\n %T\n  %a") ("S" "Useful code snippets 
> logged in
> Programming.org" entry (file+headline (concat org-directory 
> "/Programming.org") "Code
> Snippet") "* %?  %^g\n%T\n#+begin_src %^{Programming Language|R|R|C|elisp}
> \n%i\n#+end_src\n%a") ) org-export-preprocess-before-normalizing-links-hook
> '(org-remove-file-link-modifiers) org-ctrl-k-protect-subtree "ask" 
> org-format-latex-options
> '(:foreground default :background default :scale 1.3 :html-foreground "Black" 
> :html-background
> "Transparent" :html-scale 1.0 :matchers ("begin" "$1" "$" "$$" "\\(" "\\[")) 
> org-clock-out-hook
> '(org-clock-remove-empty-clock-drawer) org-export-first-hook
> '(org-beamer-initialize-open-trackers) org-mode-hook '((lambda nil 
> (local-set-key "\357" (quote
> org-mime-org-buffer-htmlize))) #[nil "\300\301\302\303\304$\207" [org-add-hook
> change-major-mode-hook org-show-block-all append local] 5] #[nil 
> "\300\301\302\303\304$\207" 
> [org-add-hook change-major-mode-hook org-babel-show-result-all append local] 
> 5] 
> org-babel-result-hide-spec org-babel-hide-all-hashes) org-directory 
> "~/Documents/orgfiles" 
> org-from-is-user-regexp "\\<Rainer M Krug\\>" org-export-latex-final-hook
> '(org-beamer-amend-header org-beamer-fix-toc org-beamer-auto-fragile-frames 
> org-beamer-place-default-actions-for-lists) org-export-latex-listings t 
> org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars) 
> org-metadown-hook
> '(org-babel-pop-to-session-maybe) org-startup-indented t org-src-mode-hook
> '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) 
> org-after-todo-state-change-hook '(org-clock-out-if-current) 
> org-babel-tangle-lang-exts
> '(("latex" . "tex") ("emacs-lisp" . "el")) org-confirm-shell-link-function 
> 'y-or-n-p )
> 
> 
> 

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