[Reproduce-devel] [bug #56482] Imfit linking with host GSL and CFITSIO

[Mohammad Akhlaghi]

URL:
  <https://savannah.nongnu.org/bugs/?56482>

                 Summary: Imfit linking with host GSL and CFITSIO
                 Project: Reproducible paper template
            Submitted by: makhlaghi
            Submitted on: Wed 12 Jun 2019 07:49:08 PM BST
                Category: Software
                Severity: 3 - Normal
              Item Group: Output not reasonable
                  Status: Postponed
                 Privacy: Public
             Assigned to: None
             Open/Closed: Open
         Discussion Lock: Any

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Details:

In task #15285 Imfit was recently included in the pipeline. However, we
noticed that for some libraries, it links with the host libraries, not the
project's!

Here is the output of `ldd' on my system:


$ ldd .local/bin/imfit
.local/bin/imfit:
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libcurl.so.4: no version
information available (required by /usr/local/lib/libcfitsio.so.8)
        linux-vdso.so.1 (0x00007ffcd8fd3000)
        libgslcblas.so.0 => /usr/local/lib/libgslcblas.so.0 (0x00007fc724eb9000)
        libgsl.so.23 => /usr/local/lib/libgsl.so.23 (0x00007fc724a33000)
        libpthread.so.0 =>
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libpthread.so.0
(0x00007fc724a12000)
        libfftw3_threads.so.3 =>
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libfftw3_threads.so.3
(0x00007fc724a09000)
        libcfitsio.so.8 => /usr/local/lib/libcfitsio.so.8 (0x00007fc7246f0000)
        libfftw3.so.3 =>
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libfftw3.so.3
(0x00007fc7245cb000)
        libcurl.so.4 => 
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libcurl.so.4
(0x00007fc72454f000)
        libstdc++.so.6 =>
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libstdc++.so.6
(0x00007fc72435c000)
        libm.so.6 => /usr/lib/libm.so.6 (0x00007fc7241e2000)
        libgcc_s.so.1 =>
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libgcc_s.so.1
(0x00007fc7241c8000)
        libc.so.6 => /usr/lib/libc.so.6 (0x00007fc724003000)
        /lib64/ld-linux-x86-64.so.2 => /usr/lib64/ld-linux-x86-64.so.2
(0x00007fc725174000)
        libssl.so.1.1 =>
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libssl.so.1.1
(0x00007fc723f67000)
        libcrypto.so.1.1 =>
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libcrypto.so.1.1
(0x00007fc723c81000)
        libz.so.1 => /TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libz.so.1
(0x00007fc723c64000)
        libdl.so.2 => 
/TEMPLATE/BUILD/DIRECTORY/software/installed/lib/libdl.so.2
(0x00007fc723c5f000)


Also, as you see above, on my system I get a linking warning (not a crash) on
every call to Imfit which says that libcurl's version information isn't
available. But this doesn't seem to be a serious problem.




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