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[myexperiment-hackers] [2574] trunk/app/views/workflows/galaxy_tool.rhtm


From: noreply
Subject: [myexperiment-hackers] [2574] trunk/app/views/workflows/galaxy_tool.rhtml: changes to documentation for the galaxy tool
Date: Wed, 9 Mar 2011 11:31:08 -0500 (EST)

Revision
2574
Author
dgc
Date
2011-03-09 11:31:07 -0500 (Wed, 09 Mar 2011)

Log Message

changes to documentation for the galaxy tool

Modified Paths

Diff

Modified: trunk/app/views/workflows/galaxy_tool.rhtml (2573 => 2574)


--- trunk/app/views/workflows/galaxy_tool.rhtml	2011-03-08 23:47:46 UTC (rev 2573)
+++ trunk/app/views/workflows/galaxy_tool.rhtml	2011-03-09 16:31:07 UTC (rev 2574)
@@ -6,12 +6,13 @@
 
 <h1>Galaxy tool download</h1>
 
-<p>Galaxy is a web-based framework to aggregate bioinformatics tools in a
-uniform way and connect them in pipelines. This download option provides you
-with a Galaxy tool that will execute this Taverna 2 workflow from a Galaxy
-server. The zip archive contains the two files needed for a Galaxy tool and
-they have to be installed in the Galaxy server. (Administration privileges are
-required for installation.)</p>
+<p><a href="" is a web-based framework to
+aggregate bioinformatics tools in a uniform way and connect them in pipelines.
+This download option provides you with a Galaxy tool that will execute this <a
+href="" 2</a> workflow from a Galaxy server.
+The zip archive contains the two files needed for a Galaxy tool and they have
+to be installed in the Galaxy server. (Administration privileges are required
+for installation.)</p>
 
 <p>To avoid potential issues, we recommend that you test workflows first in
 Taverna 2 Workbench before you create a tool to run them through Galaxy.</p>
@@ -35,6 +36,16 @@
   <% end %>
 </div>
 
+<h2>Requirements</h2>
+
+<p>The tool is implemented in Ruby, so a Ruby environment needs to be
+available.  For Debian based systems, use these commands:</p>
+
+<pre>
+$ sudo apt-get install ruby rubygems
+$ sudo gem install t2-server rubyzip
+</pre>
+
 <h2>Taverna 2 server for testing purposes</h2>
 
 <p>Since the tool submits the workflow to a Taverna 2 server, you will need to

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