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From: | jameson mcfarlane |
Subject: | [igraph] I'm getting Different MST each time |
Date: | Tue, 23 Apr 2013 01:44:42 +0000 |
Hello,
I am creating a minimum spanning tree (MST) with i-graph. For some reason, I seem to get a different MST diagram (nodes in different order) each time I run it. For example, sometimes the primary tree node is say "Jon K.". Other times, it could be "Larry Z." Could any help with what I am doing wrong? Here is the code: library(igraph) tab <- read.csv("NewJam12.csv") tab <- tab[,-1] g <- graph.adjacency(as.matrix(tab), weighted=TRUE) V(g)$label <- V(g)$name mst <- as.undirected(minimum.spanning.tree(g)) lay <- layout.reingold.tilford(mst, root=which.max(degree(mst))-1) lay <- cbind(lay[,2], lay[,1]) # rotate x11(width=20, height=10) plot(mst, layout=lay, vertex.size= 5, vertex.size2=15, vertex.shape="circle", asp=FALSE, vertex.label.cex=0.5, vertex.color="green") |
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