Re: [igraph] igraph compilation fails with icc

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Re: [igraph] igraph compilation fails with icc

From:	Tamás Nepusz
Subject:	Re: [igraph] igraph compilation fails with icc
Date:	Tue, 26 Jun 2012 11:48:25 +0200
Hello, 

I think the problem is that icc does not know the POSIX extension function 
"stpcpy", which is in the GML parser generated by bison. (yystpcpy is probably 
just an alias to stpcpy). stpcpy is like strcpy but returns a pointer to the 
*end* of the copied string. We will check for that in the future and provide a 
replacement of stpcpy for icc; in the meanwhile, try adding the following 
function to foreign-gml-parser.c somewhere in the beginning:

char* stpcpy(char* s1, const char* s2) {
    char* result = strcpy(s1, s2);
    return result + strlen(s1);
}

-- 
T.


On Tuesday, 26 June 2012 at 11:41, Jens Timmerman wrote:

> Hello all,
> 
> I just tried install igraph 0.6-1 with icc and it fails.
> Can I get some help on this?
> 
> I tried runnign R CMD INSTALL igraph_0.6-1.tar.gz
> and it fails with:
> 
> icc -std=gnu99
> -I/apps/gent/gengar/harpertown/software/R/2.14.1-ictce-4.0.4/lib64/R/include 
> -I/apps/gent/gengar/harpertown/software/imkl/10.3.4.191/mkl/include 
> -I/apps/gent/gengar/harpertown/software/imkl/10.3.4.191/mkl/include/fftw 
> -I/apps/gent/gengar/harpertown/software/GMP/4.3.1-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/SPRNG/2.0b-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/PVM/3.4.6-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/Tcl/8.5.9-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/Tk/8.5.9-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/GDAL/1.8.1-ictce-4.0.4/include 
> -DUSING_R -I. -Ics -Iglpk -Iglpk/amd -Iglpk/colamd -xHOST -O2 
> -I/usr/include/libxml2 -xHOST -O2 -I/usr/include/libxml2 -DNDEBUG 
> -DPACKAGE_VERSION=\"0.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic 
> -xHOST -O2 -c foreign-gml-lexer.c -o foreign-gml-lexer.o
> icc -std=gnu99
> -I/apps/gent/gengar/harpertown/software/R/2.14.1-ictce-4.0.4/lib64/R/include 
> -I/apps/gent/gengar/harpertown/software/imkl/10.3.4.191/mkl/include 
> -I/apps/gent/gengar/harpertown/software/imkl/10.3.4.191/mkl/include/fftw 
> -I/apps/gent/gengar/harpertown/software/GMP/4.3.1-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/SPRNG/2.0b-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/PVM/3.4.6-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/Tcl/8.5.9-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/Tk/8.5.9-ictce-4.0.4/include 
> -I/apps/gent/gengar/harpertown/software/GDAL/1.8.1-ictce-4.0.4/include 
> -DUSING_R -I. -Ics -Iglpk -Iglpk/amd -Iglpk/colamd -xHOST -O2 
> -I/usr/include/libxml2 -xHOST -O2 -I/usr/include/libxml2 -DNDEBUG 
> -DPACKAGE_VERSION=\"0.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic 
> -xHOST -O2 -c foreign-gml-parser.c -o foreign-gml-parser.o
> foreign-gml-parser.c(971): warning #266: function "stpcpy" declared
> implicitly
> return yystpcpy (yyres, yystr) - yyres;
> ^
> 
> foreign-gml-parser.c(971): warning #2330: argument of type "const char
> *" is incompatible with parameter of type "void *" (dropping qualifiers)
> return yystpcpy (yyres, yystr) - yyres;
> ^
> 
> foreign-gml-parser.c(971): error: expression must be a pointer to a
> complete object type
> return yystpcpy (yyres, yystr) - yyres;
> ^
> <snip>
> 
> 
> this is the contents of my configure.log:
> 
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
> 
> It was created by igraph configure 0.6, which was
> generated by GNU Autoconf 2.61. Invocation command line was
> 
> $ ./configure 
> 
> ## --------- ##
> ## Platform. ##
> ## --------- ##
> 
> hostname = unrelated 
> uname -m = x86_64
> uname -r = 2.6.18-308.4.1.el5.perfctr.2.6.42
> uname -s = Linux
> uname -v = #1 SMP Thu May 10 15:40:46 CEST 2012
> 
> /usr/bin/uname -p = unknown
> /bin/uname -X = unknown
> 
> /bin/arch = x86_64
> /usr/bin/arch -k = unknown
> /usr/convex/getsysinfo = unknown
> /usr/bin/hostinfo = unknown
> /bin/machine = unknown
> /usr/bin/oslevel = unknown
> /bin/universe = unknown
> 
> PATH: /software/R/2.14.1-ictce-4.0.4/bin
> PATH: /software/JAGS/3.2.0-ictce-4.0.4/bin
> PATH: /software/FFTW/3.2.2-ictce-4.0.4-float-threads/bin
> PATH: /software/OpenBUGS/3.2.1/bin
> PATH: /software/Java/1.6.0_26/usr/java/jdk1.6.0_26/bin
> PATH: /software/GDAL/1.8.1-ictce-4.0.4/bin
> PATH: /software/PROJ/4.7.0-ictce-4.0.4/bin
> PATH: /software/netCDF/4.1.3-ictce-4.0.4/bin
> PATH: /software/HDF5/1.8.7-ictce-4.0.4/bin
> PATH: /software/giflib/4.1.6-ictce-4.0.4/bin
> PATH: /software/GEOS/3.3.1-ictce-4.0.4/bin
> PATH: /software/Tk/8.5.9-ictce-4.0.4/bin
> PATH: /software/Tcl/8.5.9-ictce-4.0.4/bin
> PATH: /software/PVM/3.4.6-ictce-4.0.4/bin
> PATH: /software/imkl/10.3.4.191/mkl/bin/intel64
> PATH: /software/imkl/10.3.4.191/mkl/bin
> PATH: /software/imkl/10.3.4.191/bin
> PATH: /software/impi/4.0.2.003/bin64
> PATH: /software/impi/4.0.2.003/bin
> PATH: /software/ifort/2011.4.191/bin/intel64
> PATH: /software/ifort/2011.4.191/bin
> PATH: /software/icc/2011.4.191/bin/intel64
> PATH: /software/icc/2011.4.191/bin
> PATH: /usr/kerberos/bin
> PATH: /usr/local/bin
> PATH: /bin
> PATH: /usr/bin
> 
> 
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
> 
> configure:1789: checking for gcc
> configure:1816: result: icc -std=gnu99
> configure:2054: checking for C compiler version
> configure:2061: icc -std=gnu99 --version >&5
> icc (ICC) 12.0.4 20110427
> Copyright (C) 1985-2011 Intel Corporation. All rights reserved.
> 
> configure:2064: $? = 0
> configure:2071: icc -std=gnu99 -v >&5
> Version 12.0.4
> configure:2074: $? = 0
> configure:2081: icc -std=gnu99 -V >&5
> Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R)
> 64, Version 12.0.4.191 Build 20110427
> Copyright (C) 1985-2011 Intel Corporation. All rights reserved.
> 
> configure:2084: $? = 0
> configure:2107: checking for C compiler default output file name
> configure:2134: icc -std=gnu99 -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:2137: $? = 0
> configure:2175: result: a.out
> configure:2192: checking whether the C compiler works
> configure:2202: ./a.out
> configure:2205: $? = 0
> configure:2222: result: yes
> configure:2229: checking whether we are cross compiling
> configure:2231: result: no
> configure:2234: checking for suffix of executables
> configure:2241: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:2244: $? = 0
> configure:2268: result: 
> configure:2274: checking for suffix of object files
> configure:2300: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:2303: $? = 0
> configure:2326: result: o
> configure:2330: checking whether we are using the GNU C compiler
> configure:2359: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:2365: $? = 0
> configure:2382: result: yes
> configure:2387: checking whether icc -std=gnu99 accepts -g
> configure:2417: icc -std=gnu99 -c -g
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:2423: $? = 0
> configure:2522: result: yes
> configure:2539: checking for icc -std=gnu99 option to accept ISO C89
> configure:2613: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:2619: $? = 0
> configure:2642: result: none needed
> configure:2771: checking for Fortran compiler version
> configure:2778: gfortran --version >&5
> GNU Fortran (GCC) 4.1.2 20080704 (Red Hat 4.1.2-52)
> Copyright (C) 2007 Free Software Foundation, Inc.
> 
> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
> You may redistribute copies of GNU Fortran
> under the terms of the GNU General Public License.
> For more information about these matters, see the file named COPYING
> 
> configure:2781: $? = 0
> configure:2788: gfortran -v >&5
> Using built-in specs.
> Target: x86_64-redhat-linux
> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
> --infodir=/usr/share/info --enable-shared --enable-threads=posix
> --enable-checking=release --with-system-zlib --enable-__cxa_atexit
> --disable-libunwind-exceptions --enable-libgcj-multifile
> --enable-languages=c,c++,objc,obj-c++,java,fortran,ada
> --enable-java-awt=gtk --disable-dssi --disable-plugin
> --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre
> --with-cpu=generic --host=x86_64-redhat-linux
> Thread model: posix
> gcc version 4.1.2 20080704 (Red Hat 4.1.2-52)
> configure:2791: $? = 0
> configure:2798: gfortran -V >&5
> gfortran: '-V' option must have argument
> configure:2801: $? = 1
> configure:2809: checking whether we are using the GNU Fortran compiler
> configure:2828: gfortran -c -g -O2 conftest.F >&5
> configure:2834: $? = 0
> configure:2851: result: yes
> configure:2857: checking whether gfortran accepts -g
> configure:2874: gfortran -c -g conftest.f >&5
> configure:2880: $? = 0
> configure:2896: result: yes
> configure:3039: checking for C++ compiler version
> configure:3046: icpc --version >&5
> icpc (ICC) 12.0.4 20110427
> Copyright (C) 1985-2011 Intel Corporation. All rights reserved.
> 
> configure:3049: $? = 0
> configure:3056: icpc -v >&5
> Version 12.0.4
> configure:3059: $? = 0
> configure:3066: icpc -V >&5
> Intel(R) C++ Intel(R) 64 Compiler XE for applications running on
> Intel(R) 64, Version 12.0.4.191 Build 20110427
> Copyright (C) 1985-2011 Intel Corporation. All rights reserved.
> 
> configure:3069: $? = 0
> configure:3072: checking whether we are using the GNU C++ compiler
> configure:3101: icpc -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.cpp >&5
> configure:3107: $? = 0
> configure:3124: result: yes
> configure:3129: checking whether icpc accepts -g
> configure:3159: icpc -c -g -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.cpp >&5
> configure:3165: $? = 0
> configure:3264: result: yes
> configure:3317: icpc -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.cpp >&5
> configure:3323: $? = 0
> configure:3333: checking how to run the C++ preprocessor
> configure:3369: icpc -E -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.cpp
> configure:3375: $? = 0
> configure:3406: icpc -E -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.cpp
> conftest.cpp(8): error #2379: cannot open source file "ac_nonexistent.h"
> #include <ac_nonexistent.h>
> ^
> 
> configure:3412: $? = 2
> configure: failed program was:
> | /* confdefs.h. */
> | #define PACKAGE_NAME "igraph"
> | #define PACKAGE_TARNAME "igraph"
> | #define PACKAGE_VERSION "0.6"
> | #define PACKAGE_STRING "igraph 0.6"
> | #define PACKAGE_BUGREPORT "address@hidden (mailto:address@hidden)"
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:3445: result: icpc -E
> configure:3474: icpc -E -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.cpp
> configure:3480: $? = 0
> configure:3511: icpc -E -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.cpp
> conftest.cpp(8): error #2379: cannot open source file "ac_nonexistent.h"
> #include <ac_nonexistent.h>
> ^
> 
> configure:3517: $? = 2
> configure: failed program was:
> | /* confdefs.h. */
> | #define PACKAGE_NAME "igraph"
> | #define PACKAGE_TARNAME "igraph"
> | #define PACKAGE_VERSION "0.6"
> | #define PACKAGE_STRING "igraph 0.6"
> | #define PACKAGE_BUGREPORT "address@hidden (mailto:address@hidden)"
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:3588: checking for rintf
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for finite
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for expm1
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for rint
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for log2
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for logbl
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for snprintf
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for log1p
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for round
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3588: checking for fmin
> configure:3644: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lm >&5
> configure:3650: $? = 0
> configure:3668: result: yes
> configure:3685: checking how to run the C preprocessor
> configure:3725: icc -std=gnu99 -E
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c
> configure:3731: $? = 0
> configure:3762: icc -std=gnu99 -E
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c
> conftest.c(18): error #2379: cannot open source file "ac_nonexistent.h"
> #include <ac_nonexistent.h>
> ^
> 
> configure:3768: $? = 2
> configure: failed program was:
> | /* confdefs.h. */
> | #define PACKAGE_NAME "igraph"
> | #define PACKAGE_TARNAME "igraph"
> | #define PACKAGE_VERSION "0.6"
> | #define PACKAGE_STRING "igraph 0.6"
> | #define PACKAGE_BUGREPORT "address@hidden (mailto:address@hidden)"
> | #define HAVE_RINTF 1
> | #define HAVE_FINITE 1
> | #define HAVE_EXPM1 1
> | #define HAVE_RINT 1
> | #define HAVE_LOG2 1
> | #define HAVE_LOGBL 1
> | #define HAVE_SNPRINTF 1
> | #define HAVE_LOG1P 1
> | #define HAVE_ROUND 1
> | #define HAVE_FMIN 1
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:3801: result: icc -std=gnu99 -E
> configure:3830: icc -std=gnu99 -E
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c
> configure:3836: $? = 0
> configure:3867: icc -std=gnu99 -E
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c
> conftest.c(18): error #2379: cannot open source file "ac_nonexistent.h"
> #include <ac_nonexistent.h>
> ^
> 
> configure:3873: $? = 2
> configure: failed program was:
> | /* confdefs.h. */
> | #define PACKAGE_NAME "igraph"
> | #define PACKAGE_TARNAME "igraph"
> | #define PACKAGE_VERSION "0.6"
> | #define PACKAGE_STRING "igraph 0.6"
> | #define PACKAGE_BUGREPORT "address@hidden (mailto:address@hidden)"
> | #define HAVE_RINTF 1
> | #define HAVE_FINITE 1
> | #define HAVE_EXPM1 1
> | #define HAVE_RINT 1
> | #define HAVE_LOG2 1
> | #define HAVE_LOGBL 1
> | #define HAVE_SNPRINTF 1
> | #define HAVE_LOG1P 1
> | #define HAVE_ROUND 1
> | #define HAVE_FMIN 1
> | /* end confdefs.h. */
> | #include <ac_nonexistent.h>
> configure:3911: checking for grep that handles long lines and -e
> configure:3985: result: /bin/grep
> configure:3990: checking for egrep
> configure:4068: result: /bin/grep -E
> configure:4073: checking for ANSI C header files
> configure:4103: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4109: $? = 0
> configure:4208: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4211: $? = 0
> configure:4217: ./conftest
> configure:4220: $? = 0
> configure:4237: result: yes
> configure:4261: checking for sys/types.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for sys/stat.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for stdlib.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for string.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for memory.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for strings.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for inttypes.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for stdint.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4261: checking for unistd.h
> configure:4282: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4288: $? = 0
> configure:4304: result: yes
> configure:4326: checking sys/times.h usability
> configure:4343: icc -std=gnu99 -c -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c >&5
> configure:4349: $? = 0
> configure:4363: result: yes
> configure:4367: checking sys/times.h presence
> configure:4382: icc -std=gnu99 -E
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c
> configure:4388: $? = 0
> configure:4402: result: yes
> configure:4435: checking for sys/times.h
> configure:4442: result: yes
> configure:4469: checking for xml2-config
> configure:4487: found /usr/bin/xml2-config
> configure:4500: result: /usr/bin/xml2-config
> configure:4513: checking for xmlSAXUserParseFile in -lxml2
> configure:4548: icc -std=gnu99 -o conftest -xHOST -O2
> -I/software/imkl/10.3.4.191/mkl/include
> -I/software/imkl/10.3.4.191/mkl/include/fftw
> -I/software/GMP/4.3.1-ictce-4.0.4/include
> -I/software/SPRNG/2.0b-ictce-4.0.4/include
> -I/software/PVM/3.4.6-ictce-4.0.4/include
> -I/software/Tcl/8.5.9-ictce-4.0.4/include
> -I/software/Tk/8.5.9-ictce-4.0.4/include
> -I/software/GDAL/1.8.1-ictce-4.0.4/include conftest.c -lxml2 >&5
> /software/ifort/2011.4.191/compiler/lib/intel64/libimf.so: warning:
> warning: feupdateenv is not implemented and will always fail
> configure:4554: $? = 0
> configure:4572: result: yes
> configure:4590: checking libxml/parser.h usability
> configure:4607: icc -std=gnu99 -c -I/usr/include/libxml2
> -I/usr/include/libxml2 conftest.c >&5
> configure:4613: $? = 0
> configure:4627: result: yes
> configure:4631: checking libxml/parser.h presence
> configure:4646: icc -std=gnu99 -E -I/usr/include/libxml2 conftest.c
> configure:4652: $? = 0
> configure:4666: result: yes
> configure:4699: checking for libxml/parser.h
> configure:4706: result: yes
> configure:4759: checking for __gmpz_add in -lgmp
> configure:4794: icpc -o conftest -xHOST -O2 -xHOST -O2
> -I/usr/include/libxml2 conftest.cpp -lgmp >&5
> configure:4800: $? = 0
> configure:4818: result: yes
> configure:4832: checking gmp.h usability
> configure:4849: icpc -c -xHOST -O2 -xHOST -O2 -I/usr/include/libxml2
> conftest.cpp >&5
> configure:4855: $? = 0
> configure:4869: result: yes
> configure:4873: checking gmp.h presence
> configure:4888: icpc -E -xHOST -O2 -I/usr/include/libxml2 conftest.cpp
> configure:4894: $? = 0
> configure:4908: result: yes
> configure:4941: checking for gmp.h
> configure:4948: result: yes
> configure:5099: creating ./config.status
> 
> ## ---------------------- ##
> ## Running config.status. ##
> ## ---------------------- ##
> 
> This file was extended by igraph config.status 0.6, which was
> generated by GNU Autoconf 2.61. Invocation command line was
> 
> CONFIG_FILES = 
> CONFIG_HEADERS = 
> CONFIG_LINKS = 
> CONFIG_COMMANDS = 
> $ ./config.status 
> 
> on unrelated
> 
> config.status:606: creating src/Makevars
> config.status:606: creating src/config.h
> config.status:834: src/config.h is unchanged
> 
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
> 
> ac_cv_c_compiler_gnu=yes
> ac_cv_cxx_compiler_gnu=yes
> ac_cv_env_CCC_set=
> ac_cv_env_CCC_value=
> ac_cv_env_CC_set=
> ac_cv_env_CC_value=
> ac_cv_env_CFLAGS_set=
> ac_cv_env_CFLAGS_value=
> ac_cv_env_CPPFLAGS_set=
> ac_cv_env_CPPFLAGS_value=
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_CXXCPP_set=
> ac_cv_env_CXXCPP_value=
> ac_cv_env_CXXFLAGS_set=
> ac_cv_env_CXXFLAGS_value=
> ac_cv_env_CXX_set=
> ac_cv_env_CXX_value=
> ac_cv_env_FCFLAGS_set=
> ac_cv_env_FCFLAGS_value=
> ac_cv_env_FC_set=
> ac_cv_env_FC_value=
> ac_cv_env_LDFLAGS_set=
> ac_cv_env_LDFLAGS_value=
> ac_cv_env_LIBS_set=
> ac_cv_env_LIBS_value=
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_fc_compiler_gnu=yes
> ac_cv_func_expm1=yes
> ac_cv_func_finite=yes
> ac_cv_func_fmin=yes
> ac_cv_func_log1p=yes
> ac_cv_func_log2=yes
> ac_cv_func_logbl=yes
> ac_cv_func_rint=yes
> ac_cv_func_rintf=yes
> ac_cv_func_round=yes
> ac_cv_func_snprintf=yes
> ac_cv_header_gmp_h=yes
> ac_cv_header_inttypes_h=yes
> ac_cv_header_libxml_parser_h=yes
> ac_cv_header_memory_h=yes
> ac_cv_header_stdc=yes
> ac_cv_header_stdint_h=yes
> ac_cv_header_stdlib_h=yes
> ac_cv_header_string_h=yes
> ac_cv_header_strings_h=yes
> ac_cv_header_sys_stat_h=yes
> ac_cv_header_sys_times_h=yes
> ac_cv_header_sys_types_h=yes
> ac_cv_header_unistd_h=yes
> ac_cv_lib_gmp___gmpz_add=yes
> ac_cv_lib_xml2_xmlSAXUserParseFile=yes
> ac_cv_objext=o
> ac_cv_path_EGREP='/bin/grep -E'
> ac_cv_path_GREP=/bin/grep
> ac_cv_path_XML2CONFIG=/usr/bin/xml2-config
> ac_cv_prog_CPP='icc -std=gnu99 -E'
> ac_cv_prog_CXXCPP='icpc -E'
> ac_cv_prog_ac_ct_CC='icc -std=gnu99'
> ac_cv_prog_cc_c89=
> ac_cv_prog_cc_g=yes
> ac_cv_prog_cxx_g=yes
> ac_cv_prog_fc_g=yes
> 
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
> 
> CC='icc -std=gnu99'
> CFLAGS='-xHOST -O2 -I/usr/include/libxml2'
> CPP='icc -std=gnu99 -E'
> CPPFLAGS='-xHOST -O2 -I/usr/include/libxml2'
> CXX='icpc'
> CXXCPP='icpc -E'
> CXXFLAGS='-xHOST -O2'
> DEFS='-DHAVE_CONFIG_H'
> ECHO_C=''
> ECHO_N='-n'
> ECHO_T=''
> EGREP='/bin/grep -E'
> EXEEXT=''
> FC='gfortran'
> FCFLAGS='-g -O2'
> GLPK_LIBS=''
> GMP_LIBS='-lgmp'
> GREP='/bin/grep'
> HAVE_GLPK='1'
> HAVE_GMP='1'
> HAVE_LIBXML='1'
> LDFLAGS=''
> LIBOBJS=''
> LIBS=''
> LTLIBOBJS=''
> OBJEXT='o'
> PACKAGE_BUGREPORT='address@hidden (mailto:address@hidden)'
> PACKAGE_NAME='igraph'
> PACKAGE_STRING='igraph 0.6'
> PACKAGE_TARNAME='igraph'
> PACKAGE_VERSION='0.6'
> PATH_SEPARATOR=':'
> SHELL='/bin/sh'
> XML2CONFIG='/usr/bin/xml2-config'
> XML2_CFLAGS='-I/usr/include/libxml2'
> XML2_LIBS='-lxml2 -lz -lm'
> ac_ct_CC='icc -std=gnu99'
> ac_ct_CXX=''
> ac_ct_FC=''
> bindir='${exec_prefix}/bin'
> build_alias=''
> datadir='${datarootdir}'
> datarootdir='${prefix}/share'
> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
> dvidir='${docdir}'
> exec_prefix='${prefix}'
> host_alias=''
> htmldir='${docdir}'
> includedir='${prefix}/include'
> infodir='${datarootdir}/info'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localedir='${datarootdir}/locale'
> localstatedir='${prefix}/var'
> mandir='${datarootdir}/man'
> oldincludedir='/usr/include'
> pdfdir='${docdir}'
> prefix='/usr/local'
> program_transform_name='s,x,x,'
> psdir='${docdir}'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target_alias=''
> 
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
> 
> #define PACKAGE_NAME "igraph"
> #define PACKAGE_TARNAME "igraph"
> #define PACKAGE_VERSION "0.6"
> #define PACKAGE_STRING "igraph 0.6"
> #define PACKAGE_BUGREPORT "address@hidden (mailto:address@hidden)"
> #define HAVE_RINTF 1
> #define HAVE_FINITE 1
> #define HAVE_EXPM1 1
> #define HAVE_RINT 1
> #define HAVE_LOG2 1
> #define HAVE_LOGBL 1
> #define HAVE_SNPRINTF 1
> #define HAVE_LOG1P 1
> #define HAVE_ROUND 1
> #define HAVE_FMIN 1
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_TIMES_H 1
> #define HAVE_LIBXML 1
> #define HAVE_GMP 1
> #define HAVE_GLPK 1
> #define IGRAPH_THREAD_LOCAL
> 
> configure: exit 0
> 
> 
> 
> 
> 
> _______________________________________________
> igraph-help mailing list
> address@hidden (mailto:address@hidden)
> https://lists.nongnu.org/mailman/listinfo/igraph-help
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