Re: [igraph] Trouble installing R igraph 0.6 on Mac OS X Lion

[Gábor Csárdi]

I don't have access to Lion, but there are a lot of similar issues on
the web, e.g:
http://stackoverflow.com/questions/1365211/error-in-xcode-project-ld-library-not-found-for-lcrt1-10-6-o

See this for more:
https://www.google.com/search?q=ld:+library+not+found+for+lcrt1.10.6.o

G.

On Tue, Jan 17, 2012 at 5:17 PM, Marcel Salathé
<address@hidden> wrote:
> Gabor, here's the output in the log file. Slightly verbose but hopefully 
> helpful. There's seems to be some issue with a library (-lcrt1.10.6.o) but I 
> couldn't find anything helpful on the web.
>
> I still have Xcode 3.2 btw.
>
> Thanks
> Marcel
>
>
>
>
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
>
> It was created by igraph configure 0.6, which was
> generated by GNU Autoconf 2.61.  Invocation command line was
>
>  $ ./configure
>
> ## --------- ##
> ## Platform. ##
> ## --------- ##
>
> hostname = client-75-102-84-107.mobility-up.psu.edu
> uname -m = x86_64
> uname -r = 11.2.0
> uname -s = Darwin
> uname -v = Darwin Kernel Version 11.2.0: Tue Aug  9 20:54:00 PDT 2011; 
> root:xnu-1699.24.8~1/RELEASE_X86_64
>
> /usr/bin/uname -p = i386
> /bin/uname -X     = unknown
>
> /bin/arch              = unknown
> /usr/bin/arch -k       = unknown
> /usr/convex/getsysinfo = unknown
> /usr/bin/hostinfo      = Mach kernel version:
>         Darwin Kernel Version 11.2.0: Tue Aug  9 20:54:00 PDT 2011; 
> root:xnu-1699.24.8~1/RELEASE_X86_64
> Kernel configured for up to 4 processors.
> 2 processors are physically available.
> 4 processors are logically available.
> Processor type: i486 (Intel 80486)
> Processors active: 0 1 2 3
> Primary memory available: 8.00 gigabytes
> Default processor set: 133 tasks, 595 threads, 4 processors
> Load average: 0.96, Mach factor: 3.03
> /bin/machine           = unknown
> /usr/bin/oslevel       = unknown
> /bin/universe          = unknown
>
> PATH: /Library/Frameworks/Python.framework/Versions/2.7/bin
> PATH: /Library/Frameworks/Python.framework/Versions/Current/bin
> PATH: /Library/Frameworks/Python.framework/Versions/2.6/bin
> PATH: /usr/bin
> PATH: /bin
> PATH: /usr/sbin
> PATH: /sbin
> PATH: /usr/local/bin
> PATH: /usr/X11/bin
> PATH: /Developer/usr/bin
>
>
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
>
> configure:1762: checking for gcc
> configure:1778: found /Developer/usr/bin/gcc
> configure:1789: result: gcc
> configure:2027: checking for C compiler version
> configure:2034: gcc --version >&5
> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3)
> Copyright (C) 2007 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
> configure:2037: $? = 0
> configure:2044: gcc -v >&5
> Using built-in specs.
> Target: i686-apple-darwin10
> Configured with: /var/tmp/gcc/gcc-5666.3~6/src/configure --disable-checking 
> --enable-werror --prefix=/usr --mandir=/share/man 
> --enable-languages=c,objc,c++,obj-c++ 
> --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib 
> --build=i686-apple-darwin10 --program-prefix=i686-apple-darwin10- 
> --host=x86_64-apple-darwin10 --target=i686-apple-darwin10 
> --with-gxx-include-dir=/include/c++/4.2.1
> Thread model: posix
> gcc version 4.2.1 (Apple Inc. build 5666) (dot 3)
> configure:2047: $? = 0
> configure:2054: gcc -V >&5
> gcc-4.2: argument to `-V' is missing
> configure:2057: $? = 1
> configure:2080: checking for C compiler default output file name
> configure:2107: gcc    conftest.c  >&5
> ld: library not found for -lcrt1.10.6.o
> collect2: ld returned 1 exit status
> configure:2110: $? = 1
> configure:2148: result:
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "igraph"
> | #define PACKAGE_TARNAME "igraph"
> | #define PACKAGE_VERSION "0.6"
> | #define PACKAGE_STRING "igraph 0.6"
> | #define PACKAGE_BUGREPORT "address@hidden"
> | /* end confdefs.h.  */
> |
> | int
> | main ()
> | {
> |
> |   ;
> |   return 0;
> | }
> configure:2155: error: C compiler cannot create executables
> See `config.log' for more details.
>
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
>
> ac_cv_env_CCC_set=
> ac_cv_env_CCC_value=
> ac_cv_env_CC_set=
> ac_cv_env_CC_value=
> ac_cv_env_CFLAGS_set=
> ac_cv_env_CFLAGS_value=
> ac_cv_env_CPPFLAGS_set=
> ac_cv_env_CPPFLAGS_value=
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_CXXCPP_set=
> ac_cv_env_CXXCPP_value=
> ac_cv_env_CXXFLAGS_set=
> ac_cv_env_CXXFLAGS_value=
> ac_cv_env_CXX_set=
> ac_cv_env_CXX_value=
> ac_cv_env_LDFLAGS_set=
> ac_cv_env_LDFLAGS_value=
> ac_cv_env_LIBS_set=
> ac_cv_env_LIBS_value=
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_prog_ac_ct_CC=gcc
>
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
>
> CC='gcc'
> CFLAGS=''
> CPP=''
> CPPFLAGS=''
> CXX=''
> CXXCPP=''
> CXXFLAGS=''
> DEFS=''
> ECHO_C='ECHO_N=''
> ECHO_T=''
> EGREP=''
> EXEEXT=''
> GMP_LIBS=''
> GREP=''
> HAVE_FMEMOPEN=''
> HAVE_GMP=''
> HAVE_LIBXML=''
> HAVE_OPEN_MEMSTREAM=''
> LDFLAGS=''
> LIBOBJS=''
> LIBS=''
> LTLIBOBJS=''
> OBJEXT=''
> PACKAGE_BUGREPORT='address@hidden'
> PACKAGE_NAME='igraph'
> PACKAGE_STRING='igraph 0.6'
> PACKAGE_TARNAME='igraph'
> PACKAGE_VERSION='0.6'
> PATH_SEPARATOR=':'
> SHELL='/bin/sh'
> XML2CONFIG=''
> XML2_CFLAGS=''
> XML2_LIBS=''
> ac_ct_CC='gcc'
> ac_ct_CXX=''
> bindir='${exec_prefix}/bin'
> build_alias=''
> datadir='${datarootdir}'
> datarootdir='${prefix}/share'
> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
> dvidir='${docdir}'
> exec_prefix='NONE'
> host_alias=''
> htmldir='${docdir}'
> includedir='${prefix}/include'
> infodir='${datarootdir}/info'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localedir='${datarootdir}/locale'
> localstatedir='${prefix}/var'
> mandir='${datarootdir}/man'
> oldincludedir='/usr/include'
> pdfdir='${docdir}'
> prefix='NONE'
> program_transform_name='s,x,x,'
> psdir='${docdir}'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target_alias=''
>
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
>
> #define PACKAGE_NAME "igraph"
> #define PACKAGE_TARNAME "igraph"
> #define PACKAGE_VERSION "0.6"
> #define PACKAGE_STRING "igraph 0.6"
> #define PACKAGE_BUGREPORT "address@hidden"
>
> configure: exit 77
>
>
>
>
>
>
> On Jan 17, 2012, at 4:58 PM, Gábor Csárdi wrote:
>
>> Marcel,
>>
>> uncompress the .tar.gz and try to install the uncompressed directory:
>>
>> R CMD INSTALL igraph
>>
>> and then look at the config.log file.
>>
>> G.
>>
>> On Tue, Jan 17, 2012 at 4:54 PM, Marcel Salathé
>> <address@hidden> wrote:
>>> Hi all
>>>
>>> I have some igraph R code that used to work one year ago. Since then I've 
>>> upgraded to Lion, uninstalled igraph 0.6, and now I'm trying to reinstall 
>>> it.
>>>
>>> I run
>>> R CMD INSTALL /Users/marcel/Desktop/igraph_nightly_0.6-1825-20100330.tar.gz
>>>
>>> (because that was my last version of 0.6 that I used)
>>>
>>> At first, I get the complaint that no C compiler can be found. This is 
>>> apparently quite common since the compilers got moved around during the 
>>> Lion upgrade process. A workaround is to put
>>>
>>> export PATH=${PATH}:/Developer/usr/bin
>>>
>>> in the ~./bash_profile file.
>>>
>>> Now it DOES find the compiler but gives me the following error message:
>>>
>>> * installing to library 
>>> ‘/Library/Frameworks/R.framework/Versions/2.13/Resources/library’
>>> * installing *source* package ‘igraph’ ...
>>> checking for gcc... gcc
>>> checking for C compiler default output file name...
>>> configure: error: C compiler cannot create executables
>>> See `config.log' for more details.
>>> ERROR: configuration failed for package ‘igraph’
>>> * removing 
>>> ‘/Library/Frameworks/R.framework/Versions/2.13/Resources/library/igraph’
>>> * restoring previous 
>>> ‘/Library/Frameworks/R.framework/Versions/2.13/Resources/library/igraph’
>>>
>>> I don't understand why it can't create executables. There is also no 
>>> config.log file that I could consult for more details.
>>>
>>> Anyone any idea of what's going on?
>>>
>>> Thanks!
>>> Marcel
>>> _______________________________________________
>>> igraph-help mailing list
>>> address@hidden
>>> https://lists.nongnu.org/mailman/listinfo/igraph-help
>>
>>
>>
>> --
>> Gabor Csardi <address@hidden>     MTA KFKI RMKI
>>
>> _______________________________________________
>> igraph-help mailing list
>> address@hidden
>> https://lists.nongnu.org/mailman/listinfo/igraph-help
>
>
> _______________________________________________
> igraph-help mailing list
> address@hidden
> https://lists.nongnu.org/mailman/listinfo/igraph-help



-- 
Gabor Csardi <address@hidden>     MTA KFKI RMKI