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Re: [igraph] How to remove vertex attribute in python igraph
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From: |
Gábor Csárdi |
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Subject: |
Re: [igraph] How to remove vertex attribute in python igraph |
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Date: |
Wed, 14 Jan 2009 15:17:31 +0100 |
On Wed, Jan 14, 2009 at 3:06 PM, Simone Gabbriellini
<address@hidden> wrote:
> well I am using the dot writer right now, and it works very well...
> the pity is that I need to import those files into sna to do some
> statistical tests, but the sna function read.dot doesn't seem to be
> able to read the files... althought they are well formatted, because
> GraphViz is able to read those files...
Just rename the "id" to "id2" and you will be fine. A simple one-liner
can do that in Unix or a three-liner in Python/R.
Btw. what is sna? The 'sna' R package? If yes, then that uses
adjacency matrices, just convert the igraph graph to an adjacency
matrix (get.adjacency() in R).
> so I am in what french people call a "cul del sac"... ;)
Hmmm, is this a "dead end"? If yes, then my French is improving.....
G.
> thank you,
> Simone
>
> 2009/1/14 Gábor Csárdi <address@hidden>:
>> OK, the problem is that you have an attribute called 'id' in the
>> graphml file. igraph automatically tries to add an attribute called
>> 'id' for the node ids, and you have another one, so you end up with
>> two attributes called 'id'. This should not be possible, but it seems
>> that neither the GraphML code, nor the igraph attribute code checks
>> it.
>>
>> Some functions are happy with this, like the 'dot' writer (does it
>> query attributes at all?), but it seems that the Pajek writer cannot
>> handle the case.
>>
>> A simple workaround would be to rename the attribute, e.g. replace all
>> "id" to "id2" in the file.
>>
>> I will update the code to handle these situations better, e.g. by
>> giving a warnings and renaming the attribute, or something similar.
>>
>> Thanks for the report,
>> Gabor
>>
>> On Tue, Jan 13, 2009 at 8:48 PM, Gábor Csárdi <address@hidden> wrote:
>>> I think this is a bug that was corrected in the development branch,
>>> because I have it with 0.5.1, but not with 0.6. Plus the bug is in the
>>> C code, I have it with R as well.
>>>
>>> I cannot find the correction, however, will look at it again later,
>>> perhaps tomorrow......
>>>
>>> FYI,
>>> Gabor
>>>
>>> On Tue, Jan 13, 2009 at 7:05 PM, Simone Gabbriellini
>>> <address@hidden> wrote:
>>>> Tamas,
>>>>
>>>> thank you!
>>>>
>>>> here it is (btw no problem saving in "dot" format, just in "net" format):
>>>>
>>>> <?xml version="1.0" encoding="UTF-8"?>
>>>> <graphml xmlns="http://graphml.graphdrawing.org/xmlns";
>>>> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
>>>> xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns
>>>> http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd";>
>>>> <!-- Created by igraph -->
>>>> <key id="color" for="node" attr.name="color" attr.type="string"/>
>>>> <key id="id" for="node" attr.name="id" attr.type="string"/>
>>>> <key id="color" for="edge" attr.name="color" attr.type="string"/>
>>>> <key id="weight" for="edge" attr.name="weight" attr.type="double"/>
>>>> <graph id="G" edgedefault="directed">
>>>> <node id="n0">
>>>> <data key="color">blue</data>
>>>> <data key="id">Lukather</data>
>>>> </node>
>>>> <node id="n1">
>>>> <data key="color">blue</data>
>>>> <data key="id">Gae</data>
>>>> </node>
>>>> <node id="n2">
>>>> <data key="color">blue</data>
>>>> <data key="id">milordz</data>
>>>> </node>
>>>> <node id="n3">
>>>> <data key="color">red</data>
>>>> <data key="id">Ouba</data>
>>>> </node>
>>>> <node id="n4">
>>>> <data key="color">blue</data>
>>>> <data key="id">Sualtan</data>
>>>> </node>
>>>> <node id="n5">
>>>> <data key="color">blue</data>
>>>> <data key="id">Brenn Tantor</data>
>>>> </node>
>>>> <node id="n6">
>>>> <data key="color">red</data>
>>>> <data key="id">Tremors</data>
>>>> </node>
>>>> <node id="n7">
>>>> <data key="color">red</data>
>>>> <data key="id">Shariz</data>
>>>> </node>
>>>> <node id="n8">
>>>> <data key="color">blue</data>
>>>> <data key="id">Flazzer</data>
>>>> </node>
>>>> <node id="n9">
>>>> <data key="color">red</data>
>>>> <data key="id">Quill</data>
>>>> </node>
>>>> <node id="n10">
>>>> <data key="color">blue</data>
>>>> <data key="id">Speed_399</data>
>>>> </node>
>>>> <node id="n11">
>>>> <data key="color">red</data>
>>>> <data key="id">OrkoPazZo</data>
>>>> </node>
>>>> <node id="n12">
>>>> <data key="color">blue</data>
>>>> <data key="id">skyline</data>
>>>> </node>
>>>> <node id="n13">
>>>> <data key="color">blue</data>
>>>> <data key="id">Bube</data>
>>>> </node>
>>>> <node id="n14">
>>>> <data key="color">blue</data>
>>>> <data key="id">FURIO FUNI</data>
>>>> </node>
>>>> <node id="n15">
>>>> <data key="color">blue</data>
>>>> <data key="id">Marco_Rsr</data>
>>>> </node>
>>>> <node id="n16">
>>>> <data key="color">blue</data>
>>>> <data key="id">Pendragon</data>
>>>> </node>
>>>> <node id="n17">
>>>> <data key="color">blue</data>
>>>> <data key="id">reasae</data>
>>>> </node>
>>>> <node id="n18">
>>>> <data key="color">blue</data>
>>>> <data key="id">Ardo</data>
>>>> </node>
>>>> <node id="n19">
>>>> <data key="color">blue</data>
>>>> <data key="id">Lukenet</data>
>>>> </node>
>>>> <node id="n20">
>>>> <data key="color">blue</data>
>>>> <data key="id">sNatch</data>
>>>> </node>
>>>> <node id="n21">
>>>> <data key="color">blue</data>
>>>> <data key="id">Klingo</data>
>>>> </node>
>>>> <node id="n22">
>>>> <data key="color">blue</data>
>>>> <data key="id">ginkobiloba</data>
>>>> </node>
>>>> <node id="n23">
>>>> <data key="color">blue</data>
>>>> <data key="id">Frederick Brae</data>
>>>> </node>
>>>> <node id="n24">
>>>> <data key="color">blue</data>
>>>> <data key="id">Nemi</data>
>>>> </node>
>>>> <node id="n25">
>>>> <data key="color">blue</data>
>>>> <data key="id">Madix</data>
>>>> </node>
>>>> <node id="n26">
>>>> <data key="color">blue</data>
>>>> <data key="id">Kveld</data>
>>>> </node>
>>>> <node id="n27">
>>>> <data key="color">blue</data>
>>>> <data key="id">Mondovich</data>
>>>> </node>
>>>> <node id="n28">
>>>> <data key="color">blue</data>
>>>> <data key="id">Manand</data>
>>>> </node>
>>>> <node id="n29">
>>>> <data key="color">blue</data>
>>>> <data key="id">Aiken</data>
>>>> </node>
>>>> <node id="n30">
>>>> <data key="color">blue</data>
>>>> <data key="id">rukwa</data>
>>>> </node>
>>>> <node id="n31">
>>>> <data key="color">blue</data>
>>>> <data key="id">azor</data>
>>>> </node>
>>>> <node id="n32">
>>>> <data key="color">blue</data>
>>>> <data key="id">Fds</data>
>>>> </node>
>>>> <node id="n33">
>>>> <data key="color">blue</data>
>>>> <data key="id">Tiger</data>
>>>> </node>
>>>> <node id="n34">
>>>> <data key="color">blue</data>
>>>> <data key="id">Yusaku</data>
>>>> </node>
>>>> <node id="n35">
>>>> <data key="color">blue</data>
>>>> <data key="id">silverk75</data>
>>>> </node>
>>>> <node id="n36">
>>>> <data key="color">blue</data>
>>>> <data key="id">Figus</data>
>>>> </node>
>>>> <edge source="n0" target="n1">
>>>> <data key="color">blue</data>
>>>> <data key="weight">2</data>
>>>> </edge>
>>>> <edge source="n0" target="n10">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n11">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n12">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n13">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n14">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n15">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n16">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n17">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n19">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n2">
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>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n20">
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>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n29">
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>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n3">
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>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n4">
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>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n0" target="n5">
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>>>> </edge>
>>>> <edge source="n0" target="n9">
>>>> <data key="color">blue</data>
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>>>> </edge>
>>>> <edge source="n1" target="n0">
>>>> <data key="color">blue</data>
>>>> <data key="weight">5</data>
>>>> </edge>
>>>> <edge source="n1" target="n10">
>>>> <data key="color">blue</data>
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>>>> <edge source="n1" target="n11">
>>>> <data key="color">blue</data>
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>>>> <edge source="n1" target="n12">
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>>>> <edge source="n1" target="n13">
>>>> <data key="color">blue</data>
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>>>> <edge source="n1" target="n14">
>>>> <data key="color">blue</data>
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>>>> <edge source="n1" target="n25">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
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>>>> <edge source="n1" target="n27">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n1" target="n28">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n1" target="n29">
>>>> <data key="color">blue</data>
>>>> <data key="weight">3</data>
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>>>> <data key="weight">9</data>
>>>> </edge>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">6</data>
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>>>> <edge source="n10" target="n0">
>>>> <data key="color">blue</data>
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>>>> <data key="color">blue</data>
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>>>> <data key="color">blue</data>
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>>>> <data key="weight">9</data>
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>>>> <data key="weight">2</data>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">5</data>
>>>> </edge>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">5</data>
>>>> </edge>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">5</data>
>>>> </edge>
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>>>> <data key="color">blue</data>
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>>>> </edge>
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>>>> <data key="color">blue</data>
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>>>> </edge>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">2</data>
>>>> </edge>
>>>> <edge source="n9" target="n20">
>>>> <data key="color">blue</data>
>>>> <data key="weight">2</data>
>>>> </edge>
>>>> <edge source="n9" target="n21">
>>>> <data key="color">blue</data>
>>>> <data key="weight">4</data>
>>>> </edge>
>>>> <edge source="n9" target="n22">
>>>> <data key="color">blue</data>
>>>> <data key="weight">3</data>
>>>> </edge>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n9" target="n27">
>>>> <data key="color">blue</data>
>>>> <data key="weight">1</data>
>>>> </edge>
>>>> <edge source="n9" target="n29">
>>>> <data key="color">blue</data>
>>>> <data key="weight">2</data>
>>>> </edge>
>>>> <edge source="n9" target="n3">
>>>> <data key="color">blue</data>
>>>> <data key="weight">6</data>
>>>> </edge>
>>>> <edge source="n9" target="n34">
>>>> <data key="color">blue</data>
>>>> <data key="weight">2</data>
>>>> </edge>
>>>> <edge source="n9" target="n4">
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>>>> </edge>
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>>>> <data key="color">blue</data>
>>>> <data key="weight">7</data>
>>>> </edge>
>>>> <edge source="n9" target="n6">
>>>> <data key="color">blue</data>
>>>> <data key="weight">5</data>
>>>> </edge>
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>>>> <data key="color">blue</data>
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>>>> </edge>
>>>> <edge source="n9" target="n8">
>>>> <data key="color">blue</data>
>>>> <data key="weight">4</data>
>>>> </edge>
>>>> </graph>
>>>> </graphml>
>>>>
>>>>
>>>> _______________________________________________
>>>> igraph-help mailing list
>>>> address@hidden
>>>> http://lists.nongnu.org/mailman/listinfo/igraph-help
>>>>
>>>
>>>
>>>
>>> --
>>> Gabor Csardi <address@hidden> UNIL DGM
>>>
>>
>>
>>
>> --
>> Gabor Csardi <address@hidden> UNIL DGM
>>
>>
>> _______________________________________________
>> igraph-help mailing list
>> address@hidden
>> http://lists.nongnu.org/mailman/listinfo/igraph-help
>>
>
>
> _______________________________________________
> igraph-help mailing list
> address@hidden
> http://lists.nongnu.org/mailman/listinfo/igraph-help
>
--
Gabor Csardi <address@hidden> UNIL DGM
- [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/13
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- Re: [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/13
- Re: [igraph] How to remove vertex attribute in python igraph, Gábor Csárdi, 2009/01/13
- Re: [igraph] How to remove vertex attribute in python igraph, Gábor Csárdi, 2009/01/14
- Re: [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/14
- Re: [igraph] How to remove vertex attribute in python igraph,
Gábor Csárdi <=
- Re: [igraph] How to remove vertex attribute in python igraph, Simone Gabbriellini, 2009/01/14
- Re: [igraph] How to remove vertex attribute in python igraph, Gábor Csárdi, 2009/01/14