Re: Failed to build octave-6.4.0 and octave's configuration.

Your point 1:

This will be fixed in Octave 7 (which will probably released soon).

If you don't need these features, consider configuring with `--without-sundials_ida --without-sundials_nvecserial` in the meantime.

Your point 2:

It looks like some optional dependencies aren't installed when you configure Octave. In case you need these features, check the detailed configure output which failing tests are causing that these optional features are disabled.

Which operating system (and which distribution) are you using?

Markus

Gesendet: Montag, 17. Januar 2022 um 11:14 Uhr
Von: "Pei Jia" <jiapei@longervision.com>
An: help-octave@gnu.org
Betreff: Failed to build octave-6.4.0 and octave's configuration.

Hi, all:

1. I tried to build octave-6.4.0 with the newest sundials-6.1.0, but failed with the following ERROR messages. It looks Octave is NOT compatible with the newest sundials yet?

libinterp/dldfcn/__ode15__.cc: In member function ‘void octave::IDA::set_up(const ColumnVector&)’:
libinterp/dldfcn/__ode15__.cc:420:54: error: too few arguments to function ‘_generic_SUNMatrix* SUNDenseMatrix(sunindextype, sunindextype, SUNContext)’
420 |         m_sunJacMatrix = SUNDenseMatrix (m_num, m_num);
      |                                                      ^
In file included from /usr/local/include/sunlinsol/sunlinsol_dense.h:36,
                 from libinterp/dldfcn/__ode15__.cc:62:
/usr/local/include/sunmatrix/sunmatrix_dense.h:79:27: note: declared here
   79 | SUNDIALS_EXPORT SUNMatrix SUNDenseMatrix(sunindextype M, sunindextype N, SUNContext sunctx);
      |                           ^~~~~~~~~~~~~~
libinterp/dldfcn/__ode15__.cc:424:64: error: too few arguments to function ‘_generic_SUNLinearSolver* SUNLinSol_Dense(N_Vector, SUNMatrix, SUNContext)’
424 |         m_sunLinearSolver = SUNLinSol_Dense (yy, m_sunJacMatrix);
      |                                                                ^
In file included from libinterp/dldfcn/__ode15__.cc:62:
/usr/local/include/sunlinsol/sunlinsol_dense.h:58:33: note: declared here
   58 | SUNDIALS_EXPORT SUNLinearSolver SUNLinSol_Dense(N_Vector y, SUNMatrix A, SUNContext sunctx);
      |                                 ^~~~~~~~~~~~~~~
libinterp/dldfcn/__ode15__.cc: In static member function ‘static _generic_N_Vector* octave::IDA::ColToNVec(const ColumnVector&, long int)’:
libinterp/dldfcn/__ode15__.cc:508:34: error: too few arguments to function ‘_generic_N_Vector* N_VNew_Serial(sunindextype, SUNContext)’
508 |     N_Vector v = N_VNew_Serial (n);
      |                                  ^
In file included from libinterp/dldfcn/__ode15__.cc:47:
/usr/local/include/nvector/nvector_serial.h:85:26: note: declared here
   85 | SUNDIALS_EXPORT N_Vector N_VNew_Serial(sunindextype vec_length, SUNContext sunctx);
      |                          ^~~~~~~~~~~~~
libinterp/dldfcn/__ode15__.cc: In member function ‘void octave::IDA::initialize()’:
libinterp/dldfcn/__ode15__.cc:531:24: error: too few arguments to function ‘void* IDACreate(SUNContext)’
531 |     m_mem = IDACreate ();
      |                        ^
In file included from libinterp/dldfcn/__ode15__.cc:51:
/usr/local/include/ida/ida.h:107:23: note: declared here
107 | SUNDIALS_EXPORT void *IDACreate(SUNContext sunctx);
      |                       ^~~~~~~~~
libinterp/dldfcn/__ode15__.cc: In member function ‘octave_value_list octave::IDA::integrate(int, const ColumnVector&, const ColumnVector&, const ColumnVector&, int, bool, bool, const octave_value&, bool, ColumnVector&, bool, const octave_value&)’:
libinterp/dldfcn/__ode15__.cc:690:48: error: too few arguments to function ‘_generic_N_Vector* N_VNew_Serial(sunindextype, SUNContext)’
690 |             N_Vector dky = N_VNew_Serial (m_num);
      |                                                ^
In file included from libinterp/dldfcn/__ode15__.cc:47:
/usr/local/include/nvector/nvector_serial.h:85:26: note: declared here
   85 | SUNDIALS_EXPORT N_Vector N_VNew_Serial(sunindextype vec_length, SUNContext sunctx);
      |                          ^~~~~~~~~~~~~
libinterp/dldfcn/__ode15__.cc: In member function ‘bool octave::IDA::interpolate(int&, Matrix&, ColumnVector&, int, realtype, bool, bool, const octave_value&, ColumnVector&, bool, const octave_value&, ColumnVector&, Matrix&, ColumnVector&, ColumnVector&, ColumnVector&, ColumnVector&, int&, ColumnVector&)’:
libinterp/dldfcn/__ode15__.cc:840:40: error: too few arguments to function ‘_generic_N_Vector* N_VNew_Serial(sunindextype, SUNContext)’
840 |     N_Vector dky = N_VNew_Serial (m_num);
      |                                        ^
In file included from libinterp/dldfcn/__ode15__.cc:47:
/usr/local/include/nvector/nvector_serial.h:85:26: note: declared here
   85 | SUNDIALS_EXPORT N_Vector N_VNew_Serial(sunindextype vec_length, SUNContext sunctx);
      |                          ^~~~~~~~~~~~~
libinterp/dldfcn/__ode15__.cc:842:41: error: too few arguments to function ‘_generic_N_Vector* N_VNew_Serial(sunindextype, SUNContext)’
842 |     N_Vector dkyp = N_VNew_Serial (m_num);
      |                                         ^
In file included from libinterp/dldfcn/__ode15__.cc:47:
/usr/local/include/nvector/nvector_serial.h:85:26: note: declared here
   85 | SUNDIALS_EXPORT N_Vector N_VNew_Serial(sunindextype vec_length, SUNContext sunctx);
      |                          ^~~~~~~~~~~~~
CXX      libinterp/operators/liboctinterp_la-op-bm-bm.lo
CXX      libinterp/operators/liboctinterp_la-op-bm-sbm.lo
CXX      libinterp/operators/liboctinterp_la-op-cdm-cdm.lo
CXX      libinterp/operators/liboctinterp_la-op-cdm-cm.lo
CXX      libinterp/operators/liboctinterp_la-op-cdm-cs.lo
CXX      libinterp/operators/liboctinterp_la-op-cdm-dm.lo
make[2]: *** [Makefile:19680: libinterp/dldfcn/__ode15___la-__ode15__.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory '....../octave-6.4.0'
make[1]: *** [Makefile:27541: all-recursive] Error 1
make[1]: Leaving directory '....../octave-6.4.0'
make: *** [Makefile:11166: all] Error 2

2. When I configure octave, I always get the following warnings:

configure: WARNING: Qhull library found, but does not seem to work properly. This will result in loss of functionality for some geometry functions. Please try recompiling the library with -fno-strict-aliasing.
configure: WARNING: SUNDIALS IDA library not configured with SUNLINSOL_KLU or sunlinksol_klu.h is not usable. The solvers ode15i and ode15s will not support the sparse Jacobian feature.
configure:
configure: NOTE: Libraries or auxiliary programs may be skipped if they are not found
configure: NOTE: OR if they are missing required features on your system.

Any suggestions? Thank you ...

--
Dr. Pei Jia
CTO of Longer Vision Technology (Canada) Ltd.
Email: jiapei@longervision.com
Cell Number: +1 778-863-5816

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From:	Markus Mützel
Subject:	Re: Failed to build octave-6.4.0 and octave's configuration.
Date:	Mon, 17 Jan 2022 16:25:40 +0100