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Re: sundials

From: Andrew Janke
Subject: Re: sundials
Date: Fri, 19 Apr 2019 21:10:36 -0400
User-agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10.14; rv:60.0) Gecko/20100101 Thunderbird/60.6.1

On 4/19/19 5:33 PM, Clas Jacobson wrote:
> I cannot find sundials for octave on Ubuntu 18.04. Is there a package -
> I need to be able to use this.
> Thanks
> Clas
> Clas A. Jacobson
> 1010 Horizon Way
> Manchester, CT 06042
> address@hidden <mailto:address@hidden>
> 860.783.0074 (home)
> 860.830.4151 (mobile)

Look for libsundials-*.

address@hidden:~$ cat /etc/os-release | head -2
VERSION="18.04.2 LTS (Bionic Beaver)"
address@hidden:~$ apt search sundials
Sorting... Done
Full Text Search... Done
libsundials-arkode1/bionic 2.7.0+dfsg-2build1 amd64
  differential equation solver (SUNDIALS library)

libsundials-cvode2/bionic 2.7.0+dfsg-2build1 amd64
  ordinary differential equation solver (SUNDIALS library)

libsundials-cvodes2/bionic 2.7.0+dfsg-2build1 amd64
  ODE solver with sensistivity analysis (SUNDIALS library)

libsundials-dev/bionic 2.7.0+dfsg-2build1 amd64
  Package providing everything for SUNDIALS dev work

libsundials-ida2/bionic 2.7.0+dfsg-2build1 amd64
  differential-algebraic system solver (SUNDIALS library)

libsundials-idas1/bionic 2.7.0+dfsg-2build1 amd64
  IDA solver with sensitivity capabilities (SUNDIALS library)

libsundials-kinsol2/bionic 2.7.0+dfsg-2build1 amd64
  KINSOL solver (SUNDIALS library)

libsundials-nvecparallel-hypre2/bionic 2.7.0+dfsg-2build1 amd64
  HYPRE vector operations library (SUNDIALS library)

libsundials-nvecparallel-mpi2/bionic 2.7.0+dfsg-2build1 amd64
  MPI vector operations library (SUNDIALS library)

libsundials-nvecparallel-openmp2/bionic 2.7.0+dfsg-2build1 amd64
  OpenMP vector operations library (SUNDIALS library)

libsundials-nvecparallel-petsc2/bionic 2.7.0+dfsg-2build1 amd64
  PETSc vector operations library (SUNDIALS library)

libsundials-nvecparallel-pthread2/bionic 2.7.0+dfsg-2build1 amd64
  Pthread vector operations library (SUNDIALS library)

libsundials-nvecserial2/bionic 2.7.0+dfsg-2build1 amd64
  Non-parallel vector operations library (SUNDIALS library)


Unfortunately, it doesn't look like the octave in the Ubuntu 18
repository is built against SUNDIALS.

address@hidden:~$ apt depends octave
  Depends: libamd2 (>= 1:4.5.2)
  Depends: libbz2-1.0
  Depends: libc6 (>= 2.14)
  Depends: libccolamd2 (>= 1:4.5.2)
  Depends: libcholmod3 (>= 1:4.5.2)
  Depends: libcolamd2 (>= 1:4.5.2)
  Depends: libcxsparse3 (>= 1:4.5.2)
  Depends: libfftw3-double3 (>= 3.3.5)
  Depends: libfftw3-single3 (>= 3.3.5)
  Depends: libfltk-gl1.3 (>= 1.3.0)
  Depends: libfltk1.3 (>= 1.3.3)
  Depends: libgcc1 (>= 1:3.0)
  Depends: libgl1
  Depends: libglpk40 (>= 4.59)
 |Depends: libglu1-mesa
  Depends: <libglu1>
  Depends: liboctave4 (= 4.2.2-1ubuntu1)
  Depends: libosmesa6 (>= 10.2~)
  Depends: libportaudio2 (>= 19+svn20101113)
  Depends: libqhull7
  Depends: libqscintilla2-qt5-13 (>= 2.8.4)
  Depends: libqt5core5a (>= 5.9.0~beta)
  Depends: libqt5gui5 (>= 5.7.0)
  Depends: libqt5network5 (>= 5.0.2)
  Depends: libqt5opengl5 (>= 5.0.2)
  Depends: libqt5printsupport5 (>= 5.0.2)
  Depends: libqt5widgets5 (>= 5.6.0~beta)
  Depends: libsndfile1 (>= 1.0.20)
  Depends: libstdc++6 (>= 5.2)
  Depends: libsuitesparseconfig5 (>= 1:5.0.0)
  Depends: libx11-6
  Depends: zlib1g (>= 1:1.2.2)
  Depends: texinfo
  Depends: octave-common (= 4.2.2-1ubuntu1)
  Breaks: <liboctave3v5>
  Recommends: gnuplot-qt
  Recommends: gnuplot-x11
  Recommends: gnuplot-nox
  Recommends: libopenblas-base
  Recommends: libatlas3-base
  Recommends: pstoedit
  Recommends: epstool
  Recommends: default-jre-headless
  Recommends: octave-doc
  Suggests: liboctave-dev

You may have to build from source.

Or use the flatpak Octave installation; that'll get you a newer Octave;
I don't know if it's built against SUNDIALS.


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