Problem in installation of parallel-3.1.2.tar.gz, undefined symbol: gnutls_srp_base64_decode_alloc

[Ivan Spisso]

Hi,

I am trying to install octave in HPC cluster, MArconi A1 bdw based cluser

https://wiki.u-gov.it/confluence/display/SCAIUS/UG3.1%3A+MARCONI+UserGuide

I have installed octave 4.2.2 with gnutls/

address@hidden ~]$ module li
Currently Loaded Modulefiles:
 1) profile/global
 2) autoload
 3) profile/advanced
 4) jdk/1.8.0_111
 5) gnu/6.1.0
 6) zlib/1.2.8--gnu--6.1.0
 7) blas/3.6.0--gnu--6.1.0
 8) lapack/3.6.1--gnu--6.1.0
 9) szip/2.1--gnu--6.1.0
10) hdf5/1.8.17--gnu--6.1.0
11) openmpi/1-10.3--gnu--6.1.0
12) fftw/3.3.4--openmpi--1-10.3--gnu--6.1.0
13) libnettle/3.4--gnu--6.1.0
14) gmp/6.1.1--gnu--6.1.0
15) gnutls/3.6.2--gnu--6.1.0
16) octave/4.2.2

I have tried to install struct-1.0.14.tar.gz + parallel-3.1.2.tar.gz package

Everything seems fine, except at the end when the parallel package has 
to installed.

The installation fials with

/marconi/home/userinternal/ispisso0/octave/parallel-3.1.2/x86_64-pc-linux-gnu-api-v51/parallel_generate_srp_data.oct: 
failed to load: 
/marconi/home/userinternal/ispisso0/octave/parallel-3.1.2/x86_64-pc-linux-gnu-api-v51/parallel_generate_srp_data.oct: 
undefined symbol: gnutls_srp_base64_decode_alloc
error: called from

Looking to the installation path

Looking at the installation path

/cineca/prod/opt/libraries/gnutls/3.6.2/gnu--6.1.0/share/man/man3/

address@hidden ~]$ ls 
/cineca/prod/opt/libraries/gnutls/3.6.2/gnu--6.1.0/share/man/man3/gnutls_srp_base64_decode*
../man3/gnutls_srp_base64_decode2.3
../man3/gnutls_srp_base64_decode.3

The API

/man3/gnutls_srp_base64_decode_alloc.3

is missing, but it seems that the API decode_alloc.3 has been replaced 
in the version 3.4.10 by _decode2.3

http://mail-index.netbsd.org/pkgsrc-wip-changes/2016/03/23/msg002234.html

man/man3/gnutls_srp_base64_decode.3
-man/man3/gnutls_srp_base64_decode_alloc.3
+man/man3/gnutls_srp_base64_decode2.3


Something wrong in my configuration/installation?

Regards

Ivan




--
Ivan Spisso, Ph.D.
HPC consultant for academic and industrial CFD applications
SuperComputing Applications and Innovation (SCAI) Department, CINECA
via Magnanelli 6/3, 40133  Casalecchio di Reno, Bologna (Italy)
ph.  (+39) 051 6171 445
web: www.hpc.cineca.it
e-mail: address@hidden
skype: ivanspisso
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