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Re: making octave with lapack pt

From: Clinton Winant
Subject: Re: making octave with lapack pt
Date: Fri, 3 Mar 2017 14:17:33 -0800
First thanks so much, this is just what I am looking for, and I am confused by:

Before the 'configure' call the autogenerated '$LDFLAGS' has the following contents:

After unpacking the tarball, my first step is to ./configure, so nothing has been autogenerated yet,  typing env shows nothing associated with either LD_LIBRARY_PATH or LDFLAGS  Can you explain what you meant by autogenerated?

Clint

On Fri, Mar 3, 2017 at 1:35 PM, Sergei Steshenko <address@hidden> wrote:





________________________________
From: Clinton Winant <address@hidden>
To: Octave Help <address@hidden>
Sent: Friday, March 3, 2017 8:55 PM
Subject: making octave with lapack pt



I would like octave to link with parallel thread lapack/atlas/blas.

Currently my library (~/Software/Atlas/lib) has

libatlas.a  libf77blas.a     liblapack.a   libptf77blas.a  libsatlas.so  libtstatlas.a
libcblas.a  libf77refblas.a  libptcblas.a  libptlapack.a   libtatlas.so


I configure octave with:


./configure --prefix=/opt/octave-4.2.1 --with-blas=/home/abr_ca/Software/Atlas/lib --with-lapack=/home/abr_ca/Software/Atlas/lib CPPFLAGS=-I/usr/include/hdf5/serial LDFLAGS=-L/usr/lib/$(dpkg-architecture -qDEB_HOST_MULTIARCH)/hdf5/serial
make


is there any way I can modify this so that octave links with the pt library files?

Thanks

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This is how I resolved the problem years ago:

./configure  LDFLAGS="$LDFLAGS -lmetis -l:liblapack.a" CFLAGS='-march=native -mtune=native -ftree-vectorize -O2' CXXFLAGS='-march=native -mtune=native -ftree-vectorize -O2' --enable-shared --enable-dl --enable-static --with-blas=/mnt/sdb8/sergei/AFSWD_debug/20140113/atlas-3.10.1/lib/libptf77blas.so --with-lapack=/mnt/sdb8/sergei/AFSWD_debug/20140113/atlas-3.10.1/lib/liblapack.so --prefix=/mnt/sdb8/sergei/AFSWD_debug/20140113/octave-3.6.4

.

Pay attention that both --with-blas and --with-lapack point to ATLAS libraries and that
multi-threaded
libptf77blas.so is used.


Before the 'configure' call the autogenerated '$LDFLAGS' has the following contents:

"
LDFLAGS='-L/mnt/sdb8/sergei/AFSWD_debug/20140113/GConf-2.32.4/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/GConf-2.32.4/lib/GConf/2 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/GConf-2.32.4/lib/gio/modules -L/mnt/sdb8/sergei/AFSWD_debug/20140113/GraphicsMagick-1.3.19/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/MesaLib-10.0.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ORBit2-2.14.19/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ORBit2-2.14.19/lib/orbit-2.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/Python-2.7.6/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/Python-2.7.6/lib/python2.7/config -L/mnt/sdb8/sergei/AFSWD_debug/20140113/Python-2.7.6/lib/python2.7/lib-dynload -L/mnt/sdb8/sergei/AFSWD_debug/20140113/Python-2.7.6/lib/python2.7/site-packages -L/mnt/sdb8/sergei/AFSWD_debug/20140113/SDL-1.2.15/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/SuiteSparse-3.7.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/XML-Parser-2.41/lib/site_perl/5.18.2/i686-linux-thread-multi/auto/XML/Parser/Expat -L/mnt/sdb8/sergei/AFSWD_debug/20140113/arpack-ng-3.1.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/atk-2.10.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/atlas-3.10.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/autogen-5.18.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/avahi-0.6.31/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/binutils-2.24/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/bison-2.6.5/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/blas_generic/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/bzip2-1.0.6/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/c-ares-1.10.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cairo-1.12.16/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cairo-1.12.16/lib/cairo -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cdparanoia-III-10.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cdrtools-3.00/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cdrtools-3.00/lib/profiled -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cfitsio/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cln-1.3.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cloog-0.16.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/cups-1.7.1-source/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/curl-7.34.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/dbus-1.6.18/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/dbus-glib-0.100.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/expat-2.1.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/fftw3_sse-3.3.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/fftw3_sse2-3.3.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/flac-1.2.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/flex-2.5.37/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/fltk-1.3.2-source/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/fontconfig-2.11.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/freetype-2.5.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gc-7.4.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gcc-4.7.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gcc-4.7.3/lib/gcc/i686-pc-linux-gnu/4.7.3 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gd-2.0.35/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gdb-7.6.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gdk-pixbuf-2.30.4/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gdk-pixbuf-2.30.4/lib/gdk-pixbuf-2.0/2.10.0/loaders -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gettext-0.18.3.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ghostscript-9.10/lib/ghostscript/9.10 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ginac-1.6.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/glib-2.38.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/glib-2.38.2/lib/gio/modules -L/mnt/sdb8/sergei/AFSWD_debug/20140113/glpk-4.48/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gmp-5.0.5/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gnome-vfs-2.24.4/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gnome-vfs-2.24.4/lib/gnome-vfs-2.0/modules -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gnutls-3.2.8/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gnutls-3.2.8/lib/guile/2.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gobject-introspection-1.38.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gobject-introspection-1.38.0/lib/gobject-introspection/giscanner -L/mnt/sdb8/sergei/AFSWD_debug/20140113/graphviz-2.34.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gsl-1.16/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gstreamer-0.10.36/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gstreamer-0.10.36/lib/gstreamer-0.10 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gtk+-2.24.22/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gtk+-2.24.22/lib/gtk-2.0/2.10.0/engines -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gtk+-2.24.22/lib/gtk-2.0/2.10.0/immodules -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gtk+-2.24.22/lib/gtk-2.0/2.10.0/printbackends -L/mnt/sdb8/sergei/AFSWD_debug/20140113/gtk+-2.24.22/lib/gtk-2.0/modules -L/mnt/sdb8/sergei/AFSWD_debug/20140113/guile-2.0.9/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/harfbuzz-0.9.26/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/hdf5-1.8.12/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/icu4-52.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ilmbase-2.1.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/jack-audio-connection-kit-0.109.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/jack-audio-connection-kit-0.109.2/lib/jack -L/mnt/sdb8/sergei/AFSWD_debug/20140113/jasper-1.900.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/jbig2dec-0.11/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/jbigkit-2.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/json-c-0.11/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/lapack-3.4.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/lcms-1.19/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/lcms2-2.5/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libIDL-0.8.14/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libao-1.1.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libao-1.1.0/lib/ao/plugins-4 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libart_lgpl-2.3.21/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libatomic_ops-7.4.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libavc1394-0.5.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libbonobo-2.32.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libbonobo-2.32.1/lib/bonobo/monikers -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libbonobo-2.32.1/lib/orbit-2.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libcroco-0.6.8/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libdaemon-0.14/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libelf-0.8.13/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libffi-3.0.13/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libfpx-1.3.1-3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libfreebob-1.0.11/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libgcrypt-1.6.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libglade-2.6.4/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libgpg-error-1.12/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libgsf-1.14.29/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libiconv-1.14/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libiconv_pre-1.14/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libidn-1.28/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libiec61883-1.2.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libjpeg-9a/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libmng-1.0.10/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libogg-1.3.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/liboil-0.3.17/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libpng-1.6.8/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libraw1394-2.0.5/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/librsvg-2.40.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libsamplerate-0.1.8/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libsndfile-1.0.25/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libtasn1-3.4/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libtool-2.4.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libunistring-0.9.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libusb-1.0.9/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libvorbis-1.3.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libwmf-0.2.8.4/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libwmf-0.2.8.4/lib/gtk-2.0/2.10.0/loaders -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libxml2-2.9.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libxslt-1.1.28/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/libxslt-1.1.28/lib/python2.7/site-packages -L/mnt/sdb8/sergei/AFSWD_debug/20140113/lua-5.2.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/lzo-2.06/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/metis-5.0.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/mpc-1.0.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/mpeg2dec-0.4.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/mpfr-3.1.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/mysql-5.6.15/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/mysql-5.6.15/lib/plugin -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ncurses-5.9/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/netcdf-4.2.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/nettle-2.7.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml/camlp4 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml/ocamlbuild -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml/ocamldoc -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml/site-lib/findlib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml/stublibs -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml/threads -L/mnt/sdb8/sergei/AFSWD_debug/20140113/ocaml-3.12.1/lib/ocaml/vmthreads -L/mnt/sdb8/sergei/AFSWD_debug/20140113/openexr-2.1.0/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/openssl-1.0.1f/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/openssl-1.0.1f/lib/engines -L/mnt/sdb8/sergei/AFSWD_debug/20140113/orc-0.4.16/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/p11-kit-0.18.7/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/p11-kit-0.18.7/lib/pkcs11 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/pa_snapshot_v18/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/pango-1.36.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/pango-1.36.2/lib/pango/1.8.0/modules -L/mnt/sdb8/sergei/AFSWD_debug/20140113/pcre-8.34/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/CORE -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/B -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Compress/Raw/Bzip2 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Compress/Raw/Zlib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Cwd -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Data/Dumper -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Devel/PPPort -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Devel/Peek -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Digest/MD5 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Digest/SHA -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/Byte -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/CN -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/EBCDIC -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/JP -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/KR -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/Symbol -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/TW -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Encode/Unicode -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Fcntl -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/File/DosGlob -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/File/Glob -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Filter/Util/Call -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Hash/Util -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Hash/Util/FieldHash 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-L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Tie/Hash/NamedCapture -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Time/HiRes -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Time/Piece -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Unicode/Collate -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/Unicode/Normalize -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/arybase -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/attributes -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/mro -L/mnt/sdb8/sergei/AFSWD_debug/20140113/perl-5.18.2/lib/5.18.2/i686-linux-thread-multi/auto/re 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-L/mnt/sdb8/sergei/AFSWD_debug/20140113/readline-6.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/sane-backends-1.0.24/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/speex-1.2rc1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/sqlite-autoconf-3080301/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/szip-2.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tbb42_20140122oss/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/expect5.45 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/itcl4.0.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/sqlite3.8.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/tcl8.6/graphviz -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/tdbc1.0.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/tdbcmysql1.0.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/tdbcodbc1.0.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/tdbcpostgres1.0.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tcl-8.6.1/lib/thread2.7.0 -L/mnt/sdb8/sergei/AFSWD_debug/20140113/tiff-4.0.3/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/unixODBC-2.3.2/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/wxWidgets-2.8.12/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/xz-5.0.5/lib -L/mnt/sdb8/sergei/AFSWD_debug/20140113/zlib-1.2.8/lib'

".

And in it there are paths to real BLAS and LAPACK. LD_LIBRTARY_PATH looks similar.

The point is that ATLAS needs LAPACK and BLAS (or at least one of them), so for the whole linking process to be successful paths to real LAPACK and BLAS have to be known.

--Sergei.

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