Re: Can't install dicom package (0.1.1 and 0.1.2 (user version)) in octave 4.0.2 and ubuntu 14.0

[Pablo Fernández Bustamante]

El 28/01/17 a las 07:47, Andy Buckle escribió:
> On 27 Jan 2017 11:27 p.m., "Mario Briseño" <address@hidden
> <mailto:address@hidden>> wrote:
>
>
>     I've been trying a lot of things, even changing from w10 to ubuntu
>     asa virtual
>     machine. So, I'm not a Linux user.
>     NO problem installing octave, but when I try to install dicom at
>     octave CLI i
>     have this errors:
>
>     pkg install dicom-0.1.1.tar.gz
>     dicominfo.cpp:45:33: fatal error: gdcm-2.0/gdcmReader.h: No such file or
>     directory
>     compilation terminated.
>     make: *** [dicominfo.o] Error 1
>     make: *** Waiting for unfinished jobs....
>     dicomdict.cpp:30:31: fatal error: gdcm-2.0/gdcmDict.h: No such file or
>     directory
>     compilation terminated.
>     make: *** [dicomdict.o] Error 1
>     dicomread.cpp:27:38: fatal error: gdcm-2.0/gdcmImageReader.h: No
>     such file or
>     directory
>     compilation terminated.
>     make: *** [dicomread.oct] Error 1
>     make: Entering directory '/tmp/oct-gASVrN/dicom/src'
>     mkoctfile -c  -g dicominfo.cpp
>     mkoctfile -c  -g dicomdict.cpp
>     mkoctfile  -L/usr/local/lib -lgdcmcharls  -lgdcmjpeg8 -lgdcmjpeg12
>     -lgdcmjpeg16 -lgdcmCommon -lgdcmDICT -lgdcmDSED -lgdcmIOD
>     -lgdcmMSFF   -g
>     dicomread.cpp
>     Makefile:51: recipe for target 'dicominfo.o' failed
>     Makefile:57: recipe for target 'dicomdict.o' failed
>     Makefile:44: recipe for target 'dicomread.oct' failed
>     make: Leaving directory '/tmp/oct-gASVrN/dicom/src'
>
>     pkg: error running `make' for the dicom package.
>     error: called from 'configure_make' in file
>     /usr/share/octave/4.0.2/m/pkg/private/configure_make.m near line 96,
>     column 9
>
>     I've installed the latest versions of cmake, installed the gdcm 2.6
>     package
>     and followed this page:
>     http://gdcm.sourceforge.net/wiki/index.php/Compilation
>     <http://gdcm.sourceforge.net/wiki/index.php/Compilation>
>
>     As I've said, I have just 5 hours using Ubuntu for the first time.
>
>     I'd appreciate your help!
>
>     _______________________________________________
>     Help-octave mailing list
>     address@hidden <mailto:address@hidden>
>     https://lists.gnu.org/mailman/listinfo/help-octave
>     <https://lists.gnu.org/mailman/listinfo/help-octave>
>
>
>
> Find you install the dependency, gdcm?
>
>
> _______________________________________________
> Help-octave mailing list
> address@hidden
> https://lists.gnu.org/mailman/listinfo/help-octave


I am not a dicom user but I am trying to help to diagnose the problem.
I have recently installed ubuntu 16.04 and I have just installed octave 
from the ubuntu repositories:

octave:3> ver
----------------------------------------------------------------------
GNU Octave Version: 4.0.0
GNU Octave License: GNU General Public License
Operating System: Linux 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 
17:47:47 UTC 2017 x86_64
----------------------------------------------------------------------
no packages installed.
octave:4> ls
dicom-0.1.1.tar.gz
octave:5> pkg install dicom-0.1.1.tar.gz
dicomlookup.cpp:23:31: fatal error: gdcm-2.0/gdcmDict.h: No such file or 
directory
compilation terminated.
dicominfo.cpp:45:33: fatal error: gdcm-2.0/gdcmReader.h: No such file or 
directory
compilation terminated.
dicomdict.cpp:30:31: fatal error: gdcm-2.0/gdcmDict.h: No such file or 
directory
compilation terminated.
dicomread.cpp:27:38: fatal error: gdcm-2.0/gdcmImageReader.h: No such 
file or directory

So, I need gdcm. I search in the ubuntu repositories:

~$ sudo apt-cache search gdcm
libgdcm2.6 - Grassroots DICOM runtime libraries
libvtkgdcm-java - Grassroots DICOM VTK Java bindings
libvtkgdcm-tools - Utilidades y herramientas Grassroots DICOM VTK
gdcm-doc - Grassroots DICOM documentation
libgdcm-cil - Grassroots DICOM CLI bindings
libgdcm-java - Grassroots DICOM Java bindings
libgdcm-tools - Grassroots DICOM tools and utilities
libgdcm2-dev - Grassroots DICOM development libraries and headers
libgdcm2.6-dbg - Grassroots DICOM runtime libraries, debug version
libvtkgdcm-cil - Grassroots DICOM VTK CLI bindings
libvtkgdcm2-dev - Grassroots DICOM VTK development libraries and headers
libvtkgdcm2.6 - Grassroots DICOM VTK runtime libraries
python-gdcm - Grassroots DICOM Python bindings
python-vtkgdcm - Grassroots DICOM VTK/Python bindings


I install libgdcm2.6 and libgdcm2-dev:

~$ sudo apt install libgdcm2.6 libgdcm2-dev

I try again in Octave, same errors:

octave:5> pkg install dicom-0.1.1.tar.gz
dicominfo.cpp:45:33: fatal error: gdcm-2.0/gdcmReader.h: No such file or 
directory
compilation terminated.
dicomlookup.cpp:23:31: fatal error: gdcm-2.0/gdcmDict.h: No such file or 
directory
compilation terminated.
dicomread.cpp:27:38: fatal error: gdcm-2.0/gdcmImageReader.h: No such 
file or directory
compilation terminated.
dicomdict.cpp:30:31: fatal error: gdcm-2.0/gdcmDict.h: No such file or 
directory


I try to locate gdcmDict.h and yes, it is in my system

~$ sudo updatedb
~$ locate gdcmDict.h
/usr/include/gdcm-2.6/gdcmDict.h

So, gdcmDict.h is there, but not under gdcm-2.0 but gdcm-2.6

Regards,
Pablo