On Sun, Nov 20, 2016 at 08:26:54 +0000, Yu Shen wrote:
> When compiling Octave 4.2.0 on Ubuntu 16.04LTS, per instruction here:
> http://wiki.octave.org/Octave_for_Debian_systems#Configuration
> Compiling from source
[…]
> When running make-check, there some failure, and eventually segmentation
> fault, not sure if it's related.
> Here is the information about the failure:
>
>
> libinterp/corefcn/kron.cc-tst ............................... PASS
> 14/14
> libinterp/corefcn/lookup.cc-tst ............................. PASS
> 20/20
> libinterp/corefcn/lsode.cc-tst .............................. LSODE-- AT
> T (=R1) AND STEP SIZE H (=R2), THE
> CORRECTOR CONVERGENCE FAILED REPEATEDLY
> OR WITH ABS(H) = HMIN
> In above, R1 = 0.0000000000000D+00 R2 = 0.3802108489572D-09
> LSODE-- AT T (=R1) AND STEP SIZE H (=R2), THE
> CORRECTOR CONVERGENCE FAILED REPEATEDLY
> OR WITH ABS(H) = HMIN
> In above, R1 = 0.0000000000000D+00 R2 = 0.6424715644617D-09
> LSODE-- AT T (=R1) AND STEP SIZE H (=R2), THE
> CORRECTOR CONVERGENCE FAILED REPEATEDLY
> OR WITH ABS(H) = HMIN
> In above, R1 = 0.0000000000000D+00 R2 = 0.4165001171641D-09
> PASS 2/5
> FAIL 3
> libinterp/corefcn/lu.cc-tst .................................panic:
> Segmentation fault -- stopping myself...
> octave exited with signal 11
> make[3]: Leaving directory '/home/yubrshen/tmp/octave-4.2.0'
This is not expected behavior, and looks specific to your system or how
you built Octave. Can you show exactly how you configured and built
Octave? Are you using compilers and numerical libraries installed from
Ubuntu repositories (e.g. BLAS or OpenBLAS), or from some other source?
Can you provide the complete config.log file, preferably compressed
and/or hosted on a pastebin rather than an attachment?
--
mike
Hi Mike,
Thanks for responding!
The failure reported was with 64 bit configuration change:
./configure LD_LIBRARY_PATH=/opt/OpenBLAS/lib CPPFLAGS=-I/opt/OpenBLAS/include LDFLAGS=-L/opt/OpenBLAS/lib --enable-64
I compiled OpenBLAS with modification:
compiling OpenBLAS with edits to its Makefile.rule so that BINARY=64 INTERFACE64=1.
Before that I installed dependencies:
for Debian stable,
sudo apt-get install gcc g++ gfortran make libblas-dev liblapack-dev libpcre3-dev libarpack2-dev libcurl4-gnutls-dev epstool libfftw3-dev transfig libfltk1.3-dev libfontconfig1-dev libfreetype6-dev libgl2ps-dev libglpk-dev libreadline-dev gnuplot libgraphicsmagick++1-dev libhdf5-serial-dev openjdk-7-jdk libsndfile1-dev llvm-dev lpr texinfo libgl1-mesa-dev libosmesa6-dev pstoedit portaudio19-dev libqhull-dev libqrupdate-dev libqscintilla2-dev libqt4-dev libqtcore4 libqtwebkit4 libqt4-network libqtgui4 libqt4-opengl-dev libsuitesparse-dev texlive libxft-dev zlib1g-dev autoconf automake bison flex gperf gzip icoutils librsvg2-bin libtool perl rsync tar
Here is the gist of the config.log file for the above compilation:
https://gist.github.com/yubrshen/d2faec3ee24707943574560722430dfb
I also did compilation without 64 bit configuration change, but make check also had failure, but I didn't check whether the failure is the same.